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Job DescriptionQ47005
Confidence67.90%DateThu Jan 5 12:36:08 GMT 2012
Rank270Aligned Residues190
% Identity12%Templatec3tqwA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   92.......100.........110.........120.........130.........140.........150. ........160..
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Query Sequence  QVSIGFAPGTAASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINHQLDMAVIYEHS. . . . . . . . . PVAGVSSQALL
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Template Sequence  XVRVGTIAGP. ETQLXEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANXFQHLPYLKAQIEXRGYKIVSIGKTF
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TT.


S
TTSTTS
S


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   1........10 .........20.........30.........40.........50.........60.........70.........
 
   163......170.........180.........190.........200.........210. ........220......
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Query Sequence  KEDLFLVGTQDCPGQSVDVNAIAQMNLFLPSDYSAIRLRVDEAFSLRRL. . . . . . . . . . . . . . . . TAKVIGEIESIATLT
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Template Sequence  VYPXGLYSKKI. . . . . TALTQLKTGAKIAVPSDPSNEARALLLLEKAQLIQLKTHINATPXDIASNPKKLKIVELDAAQL
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SS
.....SSGGG

TT

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GGG
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GGGG
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   80.........90 .........100.........110.........120.........130.........140.........150....
 
   227..230.........240.........250.........260.........270.........280.......
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Query Sequence  AAIASGMGVAVLPESAARSLCGAVNGWMSRITTPSMSLSLSLNLPARANLSPQAQAVKELL
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Template Sequence  SRSLGDVDLAAINTNYAIPAGLSPSRDALLTEGPNSPYANVVAVREDDKNDPRLKQLVSAL
Template Known Secondary structure  GG
TTT
S
GGGT

TTTT
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SSSS
GGGTT
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   157..160.........170.........180.........190.........200.........210.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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