Job Description Q47005 Confidence 65.15% Date Thu Jan 5 12:36:08 GMT 2012 Rank 280 Aligned Residues 188 % Identity 9% Template c3r39A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative periplasmic binding protein; PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica Resolution 2.14 Å

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		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		L	Q	A	V	R	A	E	F	P	E	I	V	I	Y	L	H	E	N	S	G	A	V	L	N	E	K	L	I	N	H	Q	L	D	M	A	V	I	Y	E	H	S	.	.	.	.	P	V	A	G	V	S	S	Q	A	L	L	K	E	D	L	F	L	V	G	T	Q	D	C	P	G	Q	S	V	D	V	N	A	I	A	Q
Query Conservation																																											.	.	.	.
Alig confidence																																											.	.	.	.
Template Conservation
Template Sequence		L	F	S	S	Y	C	Q	S	R	H	C	K	L	N	I	T	E	Y	A	W	D	G	M	L	G	A	V	A	S	G	Q	A	D	V	A	F	S	G	I	S	I	T	D	K	R	K	K	V	I	D	F	S	E	P	Y	Y	I	N	S	F	Y	L	V	S	M	A	N	H	K	I	T	L	N	N	L	N	E	L	N	K
Template Known Secondary structure											T																				T	S		S														T	T							S											T	T	S					S	S	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		M	N	L	F	L	P	S	D	Y	S	A	I	R	L	R	V	D	E	A	F	S	L	R	R	L	T	A	K	V	I	G	E	I	E	S	I	A	T	L	T	A	A	I	A	S	G	M	G	.	V	A	V	L	P	E	S	A	A	R	S	L	C	G	A	V	N	G	W	M	S	R	I	T	T	P	S	M	S	L	S
Query Conservation																																																		.
Alig confidence																																																		.
Template Conservation
Template Sequence		Y	S	I	G	Y	P	R	G	M	A	Y	S	D	L	I	K	N	D	L	E	P	K	G	Y	Y	S	L	S	K	V	K	L	Y	P	T	Y	N	E	T	M	A	D	L	K	N	G	N	L	D	L	A	F	I	E	E	P	V	Y	F	T	F	K	N	K	K	K	M	P	I	E	S	R	Y	V	F	K	N	V	D	Q
Template Known Secondary structure		S						T	T	S	T									T	G	G	G	T	S			G	G	G					S	S										T	T	S		S															T	S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	L	N	L	P	A	R	A	N	L	S	P	Q	A	Q	A	V	K	E	L	L	M	S	V	I	S	S	P	V	M	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	I	A	F	K	K	G	S	P	V	R	D	D	F	N	L	W	L	K	E	Q	G	P	Q	K	I	S	G	I	V	D	S
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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