Job Description Q47005 Confidence 99.55% Date Thu Jan 5 12:36:08 GMT 2012 Rank 35 Aligned Residues 204 % Identity 12% Template c3mz1D_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a possible transcription regulator protein2 from sinorhizobium meliloti 1021 Resolution 1.88 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	Q	V	S	I	G	F	A	P	G	T	A	A	S	S	I	T	M	P	L	L	Q	A	V	R	A	E	F	P	E	I	V	I	Y	L	H	E	N	S	G	A	V	L	N	E	K	L	I	N	H	Q	L	D	M	A	V	I	Y	E	H	S	P	V	A	G	V	S	S	Q	A	L	L	K	E	D	L	F	L
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		P	K	G	R	L	R	V	E	T	A	S	A	F	A	N	L	.	V	I	I	P	A	L	P	E	F	H	K	K	Y	P	D	I	Q	I	D	L	G	V	S	D	R	T	I	D	Y	L	A	E	N	V	D	C	A	I	R	A	G	T	L	T	D	Q	S	L	I	A	R	R	I	T	E	X	K	F	V	A	C	A	S
Template Known Secondary structure																		.	T													T	T												T	T				T	T								S					T	T	S
Template Predicted Secondary structure																		.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		V	G	T	Q	D	C	P	G	Q	S	V	D	V	N	A	I	A	Q	M	N	L	F	L	P	.	.	.	.	S	D	Y	S	A	I	R	L	R	V	D	E	A	F	S	L	R	R	L	T	A	K	V	I	G	E	I	E	S	I	A	T	L	T	A	A	I	A	S	G	M	G	V	A	V	L	P	E	S	A	A	R
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.
Template Conservation
Template Sequence		R	D	F	L	E	R	H	P	V	P	Q	H	P	S	D	L	E	K	N	C	Y	V	V	G	Y	F	L	P	K	T	G	Q	Q	X	P	F	H	F	R	R	G	N	E	E	I	E	V	S	G	R	Y	T	X	A	A	N	E	S	T	T	Y	L	A	A	A	R	A	G	L	G	V	I	Q	A	P	L	F	X	V	R
Template Known Secondary structure								S				S	S	G	G	G	G	G	T	T	S								T	T	T	T										T	T														S	S										T	T			B
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	C	G	A	V	N	G	W	M	S	R	I	T	T	P	S	M	S	L	S	L	S	L	N	L	P	A	R	A	N	L	S	P	Q	A	Q	A	V	K	E	L	L	M	S	V	I	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	L	R	N	G	T	X	V	P	V	L	P	D	W	Q	V	E	P	X	P	I	Y	L	V	Y	P	P	N	R	H	L	S	S	R	L	R	V	F	A	D	W	V	V	K	V	X	A	Q
Template Known Secondary structure							T	S						T	T		B												G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions