Job Description Q47005 Confidence 99.74% Date Thu Jan 5 12:36:08 GMT 2012 Rank 23 Aligned Residues 199 % Identity 16% Template c3kosA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii Resolution 1.83 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	Q	V	S	I	G	F	A	P	G	T	A	A	S	S	I	T	M	P	L	L	Q	A	V	R	A	E	F	P	E	I	V	I	Y	L	H	E	N	S	G	A	V	L	N	E	K	L	I	N	H	Q	L	D	M	A	V	I	Y	E	H	S	P	V	A	G	V	S	S	Q	A	L	L	K	E	D	L	F	L	V
Query Conservation
Alig confidence																	.																										.	.	.
Template Conservation																	.																										.	.	.
Template Sequence		Q	E	K	L	K	I	G	V	V	G	T	F	A	I	G	.	C	L	F	P	L	L	S	D	F	K	R	S	Y	P	H	I	D	L	H	I	S	T	H	N	N	.	.	.	R	V	D	P	A	A	E	G	L	D	Y	T	I	R	Y	G	G	G	A	W	H	D	T	D	A	Q	Y	L	C	S	A	L	X	S	P	L
Template Known Secondary structure																	.	T													T	T										S	.	.	.								T		S								S			T	T
Template Predicted Secondary structure																	.																										.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	Q	D	C	P	G	Q	S	V	D	V	N	A	I	A	Q	M	N	L	F	L	P	S	D	Y	S	A	I	R	L	R	V	D	E	A	F	S	L	R	R	L	T	A	K	V	I	G	E	I	E	S	I	A	T	L	T	A	A	I	A	S	G	M	G	V	A	V	L	P	E	S	A	A	R	S	L	C	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	S	P	T	L	A	S	Q	I	Q	T	P	A	D	I	L	K	F	P	L	L	R	S	Y	R	R	D	E	W	A	L	W	X	Q	T	V	G	E	A	P	P	S	P	T	H	N	V	X	V	F	D	S	S	V	T	X	L	E	A	A	Q	A	G	X	G	V	A	I	A	P	V	R	X	F	T	H	L	L	S	S
Template Known Secondary structure		B						T	T		S	S	G	G	G	G	G	G	S						S		T	T									T	T						T	T	S						S											T	T	S		B					G	G	G							T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	W	M	S	R	I	T	T	P	S	M	S	L	S	L	S	L	N	L	P	A	R	A	N	L	S	P	Q	A	Q	A	V	K	E	L	L	M	S	V	I	S	S
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		E	R	I	V	Q	.	P	F	L	T	Q	I	D	L	G	S	Y	W	I	T	R	L	Q	S	R	P	E	T	P	A	X	R	E	F	S	R	W	L	T	G	V	L	H	K
Template Known Secondary structure		T	S	S	B		.						B		S									T	T	S
Template Predicted Secondary structure							.
Template SS confidence
		249	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions