Job Description Q47005 Confidence 78.09% Date Thu Jan 5 12:36:08 GMT 2012 Rank 231 Aligned Residues 206 % Identity 9% Template c3kn3C_ PDB info PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes Resolution 2.41 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.
Query Sequence		Q	V	S	I	G	F	A	P	G	T	A	A	S	S	I	T	M	P	L	L	Q	A	V	R	A	E	F	P	E	I	V	I	Y	L	H	E	N	S	G	A	V	L	N	E	K	L	I	N	H	Q	L	D	M	A	V	I	Y	E	H	S	P	V	A	G	.	.	.	.	.	.	.	V	S	S	Q	A	L	L	K	E
Query Conservation																																																																		.	.	.	.	.	.	.
Alig confidence																														.																																				.	.	.	.	.	.	.
Template Conservation																														.
Template Sequence		E	L	R	X	A	T	T	T	S	T	D	N	T	G	L	L	D	V	L	A	P	A	Y	K	K	D	T	G	.	V	D	L	K	W	V	A	V	G	T	G	N	A	L	K	L	G	E	N	C	D	V	D	V	V	F	V	H	A	P	K	V	E	L	E	Y	V	E	K	G	F	G	I	D	R	T	P	V	X	Y	N
Template Known Secondary structure																														.																			T	T			S					S											T	T	S
Template Predicted Secondary structure																														.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																		.	.	.	.	.	.																										.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.																										.	.	.	.	.	.	.
Query Sequence		D	L	F	L	V	G	T	Q	D	C	P	G	Q	S	V	D	.	.	.	.	.	.	V	N	A	I	A	Q	M	N	L	F	L	P	S	D	Y	S	A	I	R	L	R	V	D	E	A	.	.	.	.	.	.	.	F	S	L	R	R	L	T	A	K	V	I	G	E	I	E	S	I	A	T	L	T	A	A	I	A	S
Query Conservation																		.	.	.	.	.	.																										.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	V	I	I	G	N	P	S	F	K	Q	K	F	T	G	X	S	V	A	E	A	F	K	L	I	E	K	E	Q	V	K	F	V	S	R	G	D	K	S	G	T	H	S	K	E	R	E	V	W	K	E	A	L	G	K	I	P	E	K	E	S	W	Y	I	E	A	G	Q	G	X	L	A	T	I	N	I	A	E	E
Template Known Secondary structure									G	G	G	T	T	T	T	T	T													T	T								S	S	S															S	S			T	T		T	T						S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.																									.	.	.	.
Query SS confidence																						.	.	.	.																									.	.	.	.
Query Sequence		G	M	G	V	A	V	L	P	E	S	A	A	R	S	L	C	G	A	V	N	.	.	.	.	G	W	M	S	R	I	T	T	P	S	M	S	L	S	L	S	L	N	L	P	A	R	A	N	.	.	.	.	L	S	P	Q	A	Q	A	V	K	E	L	L	M	S	V	I	S	S	P	V	M	E	K
Query Conservation																						.	.	.	.																									.	.	.	.
Alig confidence																						.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		Q	K	G	L	T	L	T	D	R	G	T	F	I	K	Y	E	S	N	H	K	G	K	P	P	X	V	I	V	L	E	G	D	N	T	L	K	N	F	Y	S	I	X	A	V	N	P	K	R	C	E	K	A	D	Y	K	G	A	K	Q	F	I	D	W	I	V	S	E	K	X	Q	A	E	I	A	N
Template Known Secondary structure		T	T		B														T	S		S	S		S									G	G	G											T	T	T		T	T	S													T	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions