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Job DescriptionQ47005
Confidence99.65%DateThu Jan 5 12:36:08 GMT 2012
Rank32Aligned Residues201
% Identity16%Templatec2h9bB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s)
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   90.........100.........110.........120.........130.........140.........150.........160.........
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Query Sequence  SGQVSIGFAPGTAASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDLFLV
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Template Sequence  EKTIRIGFVGSLLFG. LLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKHSLLRNERLMVA
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GGGGGT.T
TT


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TT
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   8990.........100... ......110.........120.........130.........140.........150.........160.......
 
   170........ .180.........190..... ....200.........210.........220.........230.........240..
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Query Sequence  GTQDCPGQS. . . . . VDVNAIAQMNLFLPSDY. . SAIRLRVDEAFSLRRLTAKVIGEIESIATLTAAIASGMGVAVLPESA
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Template Sequence  VHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGEGISLVPAST
Template Known Secondary structure  TTSGGGGGTTT
B
GGGSTTS


SSSSSTTT


S
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BGGG
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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   243......250.........260.........270.........280.........290....
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Query Sequence  ARSLCGAVNGWMSRITTPSMSLSLSLNLPARANLSPQAQAVKELLMSVISSP
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Template Sequence  QSIQLF. . NLSYVPLLDPDAITPIYIAVRNM. EESTYIYSLYETIRQIYAYE
Template Known Secondary structure  GG


T..TB
STT
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   248.250... ......260.........270...... ...280.........290......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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