Job Description P30138 Confidence 100.00% Date Thu Jan 5 11:45:56 GMT 2012 Rank 5 Aligned Residues 237 % Identity 25% Template c3gznB_ PDB info PDB header:protein binding/ligase Chain: B: PDB Molecule:nedd8-activating enzyme e1 catalytic subunit; PDBTitle: structure of nedd8-activating enzyme in complex with nedd82 and mln4924 Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	S	R	Q	I	L	L	D	D	I	A	L	D	G	Q	Q	K	L	L	D	S	Q	V	L	I	I	G	L	G	G	L	G	T	P	A	A	L	Y	L	A	G	A	G	V	G	T	L	V	L	A	D	D	D	D	V	H	L	S	N	L	Q	R	Q	I	L	F	T	T	E	D	I	D	R	P	K	S	Q	V	S
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		P	F	T	H	P	D	F	E	P	S	T	E	.	S	L	Q	F	L	L	D	T	C	K	V	L	V	I	G	A	G	G	L	G	C	E	L	L	K	N	L	A	L	S	G	F	R	Q	I	H	V	I	D	M	D	T	I	D	V	S	N	L	N	R	Q	F	L	F	R	P	K	D	I	G	R	P	K	A	E	V	A
Template Known Secondary structure		T	T	S		T	T					S	S	.																	S												T	T	T											B			G	G	G	G	G	T		T	T			G	G	G	T	T	S	B
Template Predicted Secondary structure														.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.													.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	R	L	T	Q	L	N	P	D	I	Q	L	T	A	L	Q	Q	R	L	T	G	E	A	L	K	D	A	V	A	R	A	D	V	V	L	D	C	T	D	N	M	A	T	R	Q	E	I	N	A	A	C	V	A	.	.	.	.	.	.	.	.	.	.	.	.	L	N	T	P	L	I	T	A	S	A	V	G	F	G
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.
Template Sequence		A	E	F	L	N	D	R	V	P	N	C	N	V	V	P	H	F	N	K	I	Q	D	F	N	.	D	T	F	Y	R	Q	F	H	I	I	V	C	G	L	D	S	I	I	A	R	R	W	I	N	G	M	L	I	S	L	L	N	Y	E	D	G	V	L	D	P	S	S	I	V	P	L	I	D	G	G	T	E	G	F	K
Template Known Secondary structure									S	T	T								S		S	T	T			.					T	T		S							S	S														T					T	T				G	G	G											T	T
Template Predicted Secondary structure																										.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Q	L	M	V	L	T	P	P	W	E	Q	G	C	Y	R	C	L	W	P	D	N	Q	E	P	E	R	N	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		G	N	A	R	V	I	L	P	.	G	M	T	A	C	I	E	C	T	L	E	L	Y	P	P	Q	V	N	F	P	M	C	T	I	A	S	M	P	R	L	P	E	H	C	I	E	Y	V	R	M	L	Q	W	P	K	E	Q	P	F	G	E	G	V	P	L	D	G	D	D	P	E	H	I	Q	W	I	F	Q	K	S	L
Template Known Secondary structure									T	.	T	T	S			T	T	T	T	G	G	G	S																	S											T							T	T		T	T					S	S
Template Predicted Secondary structure										.
Template SS confidence
		208	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
																							185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	A	G	V	V	G	P	V	V	G	V	M	G	T	L	Q	A	L	E	A	I	K	L	L	S	G	I	E	T	P	A	G	E	L	R	L	F	D	.	G	K	S	S	Q	W	R	S	L	A	L	R	R	A	S	G	C	P	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation
Template Sequence		E	R	A	S	Q	Y	N	I	R	G	V	T	Y	R	L	T	Q	G	V	V	K	R	I	I	P	A	V	A	S	T	N	A	V	I	A	A	V	C	A	T	E	V	F	K	I	A	T	S	A	Y	I	P	L	N	N	Y	L	V	F	N	D	V	D	G	L	Y	T	Y	T	F	E	A	E	R	K	E	N	C	P	A
Template Known Secondary structure							T	T															T																											S	S					S							S	S	S												T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		243	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	G	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	S	Q	L	P
Template Known Secondary structure		T		S	S
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions