Job Description P30138 Confidence 100.00% Date Thu Jan 5 11:45:56 GMT 2012 Rank 12 Aligned Residues 199 % Identity 27% Template c3cmmA_ PDB info PDB header:ligase/protein binding Chain: A: PDB Molecule:ubiquitin-activating enzyme e1 1; PDBTitle: crystal structure of the uba1-ubiquitin complex Resolution 2.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		R	Y	S	R	Q	I	L	L	D	D	I	A	L	D	G	Q	Q	K	L	L	D	S	Q	V	L	I	I	G	L	G	G	L	G	T	P	A	A	L	Y	L	A	G	A	G	V	.	.	.	.	.	G	T	L	V	L	A	D	D	D	D	V	H	L	S	N	L	Q	R	Q	I	L	F	T	T	E	D	I	D	R	P
Query Conservation																																															.	.	.	.	.
Alig confidence										.	.																																				.	.	.	.	.
Template Conservation										.	.
Template Sequence		R	Y	D	N	Q	I	A	V	.	.	F	G	L	D	F	Q	K	K	I	A	N	S	K	V	F	L	V	G	S	G	A	I	G	C	E	M	L	K	N	W	A	L	L	G	L	G	S	G	S	D	G	Y	I	V	V	T	D	N	D	S	I	E	K	S	N	L	N	R	Q	F	L	F	R	P	K	D	V	G	K	N
Template Known Secondary structure		T	T							.	.											T									S														T	T	T		S	T	T										B			G	G	G	T	T	T		T	T			G	G	G	T	T	S	B
Template Predicted Secondary structure										.	.
Template SS confidence
		416	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																		.	.													.	.	.	.
Query SS confidence																		.	.													.	.	.	.
Query Sequence		K	S	Q	V	S	Q	Q	R	L	T	Q	L	N	P	D	I	.	.	Q	L	T	A	L	Q	Q	R	L	T	G	E	.	.	.	.	A	L	K	D	A	V	A	R	A	D	V	V	L	D	C	T	D	N	M	A	T	R	Q	E	I	N	A	A	C	V	A	L	N	T	P	L	I	T	A	S	A	V	G	F	G	G
Query Conservation																		.	.													.	.	.	.
Alig confidence																		.	.													.	.	.	.
Template Conservation
Template Sequence		K	S	E	V	A	A	E	A	V	C	A	M	N	P	D	L	K	G	K	I	N	A	K	I	D	K	V	G	P	E	T	E	E	I	F	N	D	S	F	W	E	S	L	D	F	V	T	N	A	L	D	N	V	D	A	R	T	Y	V	D	R	R	C	V	F	Y	R	K	P	L	L	E	S	G	T	L	G	T	K	G
Template Known Secondary structure															G	G	G	T	T	T									S	G	G	G	T	T	T	S									S							S	S															T										T	T
Template Predicted Secondary structure
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	M	V	L	T	P	P	W	E	Q	G	C	Y	R	C	L	W	P	D	N	Q	E	P	E	R	N	C	R	T	A	G	V	V	G	P	V	V	G	V	M	G	T	L	Q	A	L	E	A	I	K	L	L	S	G
Query Conservation
Alig confidence									.																																			.	.
Template Conservation									.																																			.	.
Template Sequence		N	T	Q	V	I	I	P	.	R	L	T	E	S	Y	S	S	S	R	D	P	P	E	K	S	I	P	L	C	T	L	R	S	F	P	N	K	I	D	H	T	I	A	.	.	W	A	K	S	L	F	Q	G	Y	F	T
Template Known Secondary structure								T	.	T	T	B			G	G	G	S															T				S							.	.											T
Template Predicted Secondary structure									.																																			.	.
Template SS confidence
		574	.	.	.	.	.	580		.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.			.	.	.	.	.	620	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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