Job Description P30138 Confidence 96.17% Date Thu Jan 5 11:45:56 GMT 2012 Rank 200 Aligned Residues 179 % Identity 20% Template c2w2kB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:d-mandelate dehydrogenase; PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a. Resolution 1.85 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.										.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																				.
Query SS confidence																								.	.	.	.	.	.	.	.	.																				.
Query Sequence		R	D	F	M	R	Y	S	R	Q	I	L	L	D	D	I	A	L	D	G	Q	Q	K	.	.	.	.	.	.	.	.	.	L	L	D	S	Q	V	L	I	I	G	L	G	G	L	G	T	P	A	A	.	L	Y	L	A	G	A	G	V	G	T	L	V	L	A	D	D	D	D	V	H	L	S	N	L	Q	R	Q	I	L
Query Conservation																								.	.	.	.	.	.	.	.	.																				.
Alig confidence																								.	.	.	.	.	.	.	.	.																				.									.
Template Conservation																																																													.
Template Sequence		R	L	A	S	Y	S	E	R	A	A	R	T	G	D	P	E	T	F	N	R	V	H	L	E	I	G	K	S	A	H	N	P	R	G	H	V	L	G	A	V	G	L	G	A	I	Q	K	E	I	A	R	K	A	V	H	G	L	G	M	.	K	L	V	Y	Y	D	V	A	P	A	D	A	E	T	E	K	A	L	G	A
Template Known Secondary structure			T									T	T														T	T	T				S	T	T	S								S													T	T			.							S	S											T
Template Predicted Secondary structure																																																													.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																								.																			.	.	.	.	.	.	.
Query SS confidence																																																								.																			.	.	.	.	.	.	.
Query Sequence		F	T	T	E	D	I	D	R	P	K	S	Q	V	S	Q	Q	R	L	T	Q	L	N	P	D	I	Q	L	T	A	L	Q	Q	R	L	T	G	E	A	L	K	D	A	V	A	R	A	D	V	V	L	D	C	T	D	.	N	M	A	T	R	Q	E	I	N	A	A	C	V	A	L	N	T	P	.	.	.	.	.	.	.
Query Conservation																																																								.																			.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																			.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	R	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	E	E	L	A	R	R	S	D	C	V	S	V	S	V	P	Y	M	K	L	T	H	H	L	I	D	E	A	F	F	A	A	M	K	P	G	S	R	I	V	N	T
Template Known Secondary structure					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S									S									S	G	G	G	T	T		B								S		T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		209	210	.	.																																		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
												146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	I	T	A	S	A	V	G	F	G	G	Q	L	M	V	L	T	P	P	W	E	Q	G	C	Y	R	C	L	W	P	D	N	Q	E	P	E	R	N	C	R	T	A	G	V	V	G	P	V	V	G	V	M	G	T	L	Q	A	L	E	A	I	K	L	L	S	G	I	E	T	P
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																.
Template Conservation																																											.
Template Sequence		A	R	G	P	V	I	S	Q	D	A	L	I	A	A	L	K	S	G	K	L	L	S	A	G	L	D	V	H	E	F	E	P	N	V	S	K	E	L	I	E	M	.	K	H	V	T	L	T	T	H	I	G	G	V	A	I	E	T	F	H	E	F	E	R	L	T	M	T	N	I	D	R	F	L	L	Q	G	K	P	L
Template Known Secondary structure		S		G	G	G	B											T	T	S							S	S		T	T	T	T	S							T	S	.	S	S					S	S		T	T		S																					T
Template Predicted Secondary structure																																											.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		216	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		335	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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