Job Description P39346 Confidence 100.00% Date Thu Jan 5 11:59:35 GMT 2012 Rank 43 Aligned Residues 303 % Identity 15% Template c3fbgA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative arginate lyase; PDBTitle: crystal structure of a putative arginate lyase from staphylococcus2 haemolyticus Resolution 1.60 Å

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		4	.	.	.	.	.	10	.							.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.
Predicted Secondary structure										.	.	.	.	.	.														.																																																.	.
Query SS confidence										.	.	.	.	.	.														.																																																.	.
Query Sequence		K	T	Q	S	C	V	V	A	.	.	.	.	.	.	G	K	K	T	V	A	V	T	E	Q	T	I	D	.	W	N	N	N	G	T	L	V	Q	I	T	R	G	G	I	C	G	S	D	L	H	Y	Y	Q	E	G	K	V	G	N	F	M	I	K	A	P	M	V	L	G	H	E	V	I	G	K	V	.	.	I	H	S
Query Conservation										.	.	.	.	.	.														.																																																.	.
Alig confidence										.	.	.	.	.	.														.																													.	.	.	.	.															.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		S	L	K	A	I	G	F	E	Q	P	F	K	L	S	D	G	N	L	F	K	T	F	N	L	D	I	P	E	P	K	V	H	E	I	L	V	K	I	Q	S	I	S	V	N	P	V	D	T	K	Q	R	L	M	D	V	S	.	.	.	.	.	K	A	P	R	V	L	G	F	D	A	I	G	V	V	E	S	V	G	N
Template Known Secondary structure								B	S	S				G	G	G																T	T																			T	T	S			S	.	.	.	.	.	S	S		B															T
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.						.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	S	E	L	H	E	G	Q	T	V	A	I	N	P	S	K	P	C	G	H	C	K	Y	C	I	E	H	N	E	N	Q	C	T	D	M	R	F	F	G	S	A	M	Y	F	P	H	V	D	G	G	F	T	R	Y	K	M	V	E	T	S	Q	C	V	P	Y	P	A	K	A	D	E	K	V	M	A	F	A	E	P
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	T	M	F	N	Q	G	D	I	V	Y	Y	S	G	S	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	G	S	N	A	E	Y	Q	L	I	N	E	R	L	V	A	K	A	P	K	N	I	S	A	E	Q	A	V	S	L	P	L
Template Known Secondary structure		T			S			T	T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S	S	B	S						G	G	G						S	S	S						T	T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.																														.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.									.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.																																																														.
Query SS confidence												.	.	.	.	.	.	.	.																																																														.
Query Sequence		L	A	V	A	I	H	A	A	H	Q	.	.	.	.	.	.	.	.	A	G	E	L	Q	G	K	R	V	F	I	S	G	V	G	P	I	G	C	L	I	V	S	A	V	K	T	L	G	A	A	E	I	V	C	A	D	V	S	P	R	S	L	S	L	G	K	E	M	G	A	D	V	L	V	N	P	Q	N	D	D	.
Query Conservation												.	.	.	.	.	.	.	.																																																														.
Alig confidence												.	.	.	.	.	.	.	.																																																														.
Template Conservation
Template Sequence		T	G	I	T	A	Y	E	T	L	F	D	V	F	G	I	S	R	N	R	N	E	N	E	G	K	T	L	L	I	I	N	G	A	G	G	V	G	S	I	A	T	Q	I	A	K	A	Y	G	L	R	V	I	T	T	A	S	R	N	E	T	I	E	W	T	K	K	M	G	A	D	I	V	L	N	H	K	E	S	L	L
Template Known Secondary structure												T	T	S				S	S					T	T							S	T	T	S													T	T									S											T		S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	H	W	K	A	E	K	G	Y	F	D	V	S	F	E	V	S	G	H	P	S	S	V	N	T	C	L	E	V	T	R	A	R	G	V	M	V	Q	V	G	M	G	G	A	M	A	E	F	P	M	M	T	L	I	G	K	E	I	S	L	R	G	S	F	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.
Template Sequence		N	Q	F	K	T	Q	G	I	E	L	V	D	Y	V	F	C	T	F	N	T	D	M	Y	Y	D	D	M	I	Q	L	V	K	P	R	G	H	I	A	T	I	V	A	F	E	N	D	.	.	Q	D	L	N	A	L	K	P	K	S	L	S	F	S	H	E	F	M	F	A	R	P	L	N	Q	T	D	D	M	I	K	H
Template Known Secondary structure								T										S	S																						S	S			S	S		.	.			G	G	G	G	T	T	T	T								T	T					T	T		T	T	T
Template Predicted Secondary structure																																																.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		T	S	E	F	N	T	A	V	S	W	L	A	N	G	V	I	N	P	L	P	.	L	L	S	A	E	Y	P	F	T	D	L	E	E	A	L	R	F	A	G	D	K	T	Q	A	A	K	V	Q	L	V
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		H	E	Y	L	E	D	I	T	N	K	V	E	Q	N	I	Y	Q	P	T	T	T	K	V	I	E	G	L	T	T	E	N	I	Y	Q	A	H	Q	I	L	E	S	N	T	M	I	G	K	L	V	I	N
Template Known Secondary structure														T	T	S	S										S															T	T				S
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions