Job Description P39346 Confidence 99.51% Date Thu Jan 5 11:59:35 GMT 2012 Rank 89 Aligned Residues 281 % Identity 12% Template c2vz8B_ PDB info PDB header:transferase Chain: B: PDB Molecule:fatty acid synthase; PDBTitle: crystal structure of mammalian fatty acid synthase Resolution 3.2 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.							.
Query SS confidence																																																				.	.							.
Query Sequence		T	I	D	W	N	N	N	G	T	L	V	Q	I	T	R	G	G	I	C	G	S	D	L	H	Y	Y	Q	E	G	K	V	G	N	F	M	I	K	A	P	M	V	L	G	H	E	V	I	G	K	V	.	.	I	H	S	D	S	S	.	E	L	H	E	G	Q	T	V	A	I	N	P	S	K	P	C	G	H	C	K	Y
Query Conservation																																																				.	.							.
Alig confidence																																				.	.	.	.	.	.	.										.	.							.													.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.
Template Sequence		A	L	P	A	S	C	Q	D	R	L	C	S	V	Y	Y	T	S	L	N	F	R	D	V	M	L	A	T	G	K	L	S	P	D	S	.	.	.	.	.	.	.	I	P	G	K	W	L	T	R	D	C	M	L	G	M	E	F	S	G	R	D	A	S	G	R	R	V	M	G	M	V	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	S	T	T	T																			T	S	S		G	G	G	.	.	.	.	.	.	.			S			S		S	S												T	T									.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.
Template SS confidence
		1554	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.								.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		C	I	E	H	N	E	N	Q	C	T	D	M	R	F	F	G	S	A	M	Y	F	P	H	V	D	G	G	F	T	R	Y	K	M	V	E	T	S	Q	C	V	P	Y	P	A	K	A	D	E	K	V	M	A	F	A	E	P	L	A	V	A	I	H	A	.	.	A	H	Q	A	G	E	L	Q	G	K	R	V	F	I	S
Query Conservation																																																																	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	E	G	L	A	T	S	V	L	L	L	Q	H	A	T	W	E	V	P	S	T	W	T	L	E	E	A	A	S	V	P	I	V	Y	T	T	A	Y	Y	S	L	V	V	R	G	R	M	Q	P	G	E	S	V	L	I	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			S	B	S						G	G	G						T	T	S						T	T													T	T	T	T				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																									1618	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																						.	.	.	.																	.	.
Query SS confidence																																						.	.	.	.																	.	.
Query Sequence		G	V	G	P	I	G	C	L	I	V	S	A	V	K	T	L	G	A	A	E	I	V	C	A	D	V	S	P	R	S	L	S	L	G	K	E	.	.	.	.	M	G	A	D	V	L	V	N	P	Q	N	D	D	M	D	H	.	.	W	K	A	E	K	G	Y	F	D	V	S	F	E	V	S	G	H	P	S	S	V	N
Query Conservation																																						.	.	.	.																	.	.
Alig confidence																																						.	.	.	.																	.	.
Template Conservation
Template Sequence		S	G	S	G	G	V	G	Q	A	A	I	A	I	A	L	S	R	G	C	R	V	F	T	T	V	G	S	A	E	K	R	A	Y	L	Q	A	R	F	P	Q	L	D	E	T	C	F	A	N	S	R	D	T	S	F	E	Q	H	V	L	R	H	T	A	G	K	G	V	D	L	V	L	N	S	L	A	E	E	K	L	Q
Template Known Secondary structure			S	S	S													T	T								S													T	T			S	T	T				S	S	S	S									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1675	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.											.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		T	C	L	E	V	T	R	A	R	G	V	M	V	Q	V	G	M	G	G	A	M	A	E	F	P	.	M	M	T	L	I	G	K	E	I	S	L	R	G	S	F	R	F	.	.	.	.	.	.	.	.	.	.	T	S	E	F	N	T	A	V	S	W	L	A	N	G	V	I	N	P	L	P	L	L	S	A	E	Y	P
Query Conservation																											.																		.	.	.	.	.	.	.	.	.	.
Alig confidence																											.																		.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																																																																												.	.
Template Sequence		A	S	V	R	C	L	A	Q	H	G	R	F	L	E	I	G	K	F	D	L	S	N	N	H	A	L	G	M	A	V	F	L	K	N	V	T	F	H	G	I	L	L	D	S	L	F	E	E	G	G	A	T	W	Q	E	V	S	E	L	L	K	A	G	I	Q	E	G	V	V	Q	P	L	K	C	.	.	T	V	F	P
Template Known Secondary structure					T	T																	T	T					T	T	G	G	G	G	T								T					T	S																	T	T	T		S						.	.
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		1755	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.			.	1830	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	D	L	E	E	A	L	R	F	A	G	D	K	T	Q	A	A	K	V	Q	L	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	T	K	V	E	A	A	F	R	Y	M	A	Q	G	K	H	I	G	K	V	V	I	Q	V
Template Known Secondary structure		S	S	T										T	T			S	S						S
Template Predicted Secondary structure
Template SS confidence
		1833	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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