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Job DescriptionP39346
Confidence100.00%DateThu Jan 5 11:59:35 GMT 2012
Rank39Aligned Residues310
% Identity18%Templatec1y9eB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:hypothetical protein yhfp; PDBTitle: crystal structure of bacillus subtilis protein yhfp with2 nad bound
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10. ........20.... .....30.........40.........50.........60.........70.......
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Query Sequence  QVKTQSCVVA. . . GKKTVAVTEQTID. WNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSS
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Template Sequence  STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNI. . VREYPLILGIDAAGTVVSSNDP
Template Known Secondary structure 

B



TT



B

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   2.......10.........20.........30.........40.........50....... ..60.........70.........
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
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Query Sequence  ELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAV
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Template Sequence  RFAEGDEVIATSYELG. . . . . . . . . . . . . . . . . . . . . . . . . . VSRDGGLSEYASVPGDWLVPLPQNLSLKEAXVYGTAGF
Template Known Secondary structure  T

TT
STTBT..........................TTB

SSBS

GGG

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   80.........90..... ....100.........110.........120.........130...
 
   158.160.........170.........180.........190.........200.........210.........220.........230..
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Query Sequence  . . . . . AIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAE
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Template Sequence  TAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSXLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKAL
Template Known Secondary structure  TTT

TTS

SSTTSTT


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TTTTT
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   134.....140.........150.........160.........170.........180.........190.........200.........210...
 
   233......240.........250.........260...... ...270.........280.........290.. .......300....
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Query Sequence  KGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVG. MGGAMAEFPMMTLIGKEISLRGSFRF. . . . . . . TSEFNTAVSWLA
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Template Sequence  SKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPXDVRAAVWERXSSDLK
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SS

TT

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   214.....220.........230.........240.........250.........260.........270.........280.........290...
 
   305....310.........320.........330.........340.
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Query Sequence  NGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQL
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Template Sequence  PDQLLT. . IVDREVSLEETPGALKDILQNRIQGRVIV
Template Known Secondary structure 
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SGG..G
STTSSSS

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Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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