Phyre 2 alignment of P39346 with c1vj0B

Job Description P39346
Confidence 100.00% Date Thu Jan 5 11:59:35 GMT 2012

Rank 26 Aligned Residues 336

% Identity 25% Template c1vj0B_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:alcohol dehydrogenase, zinc-containing; PDBTitle: crystal structure of alcohol dehydrogenase (tm0436) from thermotoga2 maritima at 2.00 a resolution

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.
Predicted Secondary structure														.										.																																																.	.							.
Query SS confidence														.										.																																																.	.							.
Query Sequence	V	K	T	Q	S	C	V	V	A	G	K	K	T	.	V	A	V	T	E	Q	T	I	D	.	W	N	N	N	G	T	L	V	Q	I	T	R	G	G	I	C	G	S	D	L	H	Y	Y	Q	E	G	K	V	G	N	F	M	I	K	A	P	M	V	L	G	H	E	V	I	G	K	V	.	.	I	H	S	D	S	S	.
Query Conservation														.										.																																																.	.							.
Alig confidence														.										.																												.	.	.																		.	.							.
Template Conservation																																																				.	.	.
Template Sequence	L	K	A	H	A	M	V	L	E	K	F	N	Q	P	L	V	Y	K	E	F	E	I	S	D	I	P	R	G	S	I	L	V	E	I	L	S	A	G	V	C	G	S	D	V	H	M	F	R	G	E	D	.	.	.	P	R	V	P	L	P	I	I	L	G	H	E	G	A	G	R	V	V	E	V	N	G	E	K	R	D
Template Known Secondary structure										S	T	T	S														T	T																				T	T			.	.	.	T	T			S	S															S	S			B
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

					78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.																																							.	.	.	.
Query SS confidence	.	.	.	.																																							.	.	.	.
Query Sequence	.	.	.	.	E	L	H	E	G	Q	T	V	A	I	N	P	S	K	P	C	G	H	C	K	Y	C	I	E	H	N	E	N	Q	C	T	D	M	R	F	F	G	S	.	.	.	.	A	M	Y	F	P	H	V	D	G	G	F	T	R	Y	K	M	V	E	T	S	Q	C	V	P	Y	P	A	K	A	D	E	K	V	M
Query Conservation	.	.	.	.																																							.	.	.	.
Alig confidence	.	.	.	.																																							.	.	.	.
Template Conservation
Template Sequence	L	N	G	E	L	L	K	P	G	D	L	I	V	W	N	R	G	I	T	C	G	E	C	Y	W	C	K	V	S	K	E	P	Y	L	C	P	N	R	K	V	Y	G	I	N	R	G	C	S	E	Y	P	H	L	R	G	C	Y	S	S	H	I	V	L	D	P	E	T	D	V	L	K	V	S	E	K	D	D	L	D	V
Template Known Secondary structure	T	T	S		B			T	T							S					S	S	S					T	S			G	G	G		T	T				T	T	T	T			S	S	S	T	T				S	S	S	B	S						T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence	A	F	A	E	P	L	A	V	A	I	H	A	A	H	Q	.	.	.	A	G	E	L	Q	G	K	R	V	F	I	S	G	V	G	P	I	G	C	L	I	V	S	A	V	K	T	L	G	A	A	E	I	V	C	A	D	V	S	P	R	S	L	S	L	G	K	E	M	G	A	D	V	L	V	N	P	Q	N	D	D	M
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence	L	A	M	A	M	C	S	G	A	T	A	Y	H	A	F	D	E	Y	P	E	S	F	A	G	K	T	V	V	I	Q	G	A	G	P	L	G	L	F	G	V	V	I	A	R	S	L	G	A	E	N	V	I	V	I	A	G	S	P	N	R	L	K	L	A	E	E	I	G	A	D	L	T	L	N	R	R	E	T	S	V
Template Known Secondary structure					T	T											T		S	S			B	T									S													T	T	B	S							S											T	T		S					T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	227	.	.	230	.							.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.																																													.	.	.																		.
Query SS confidence						.	.	.	.	.	.																																													.	.	.																		.
Query Sequence	D	H	W	K	A	.	.	.	.	.	.	E	K	G	Y	F	D	V	S	F	E	V	S	G	H	P	S	S	V	N	T	C	L	E	V	T	R	A	R	G	V	M	V	Q	V	G	M	G	G	A	M	A	E	F	P	.	.	.	M	M	T	L	I	G	K	E	I	S	L	R	G	S	F	R	F	.	T	S	E	F
Query Conservation						.	.	.	.	.	.																																													.	.	.																		.
Alig confidence						.	.	.	.	.	.																																													.	.	.																		.
Template Conservation
Template Sequence	E	E	R	R	K	A	I	M	D	I	T	H	G	R	G	A	D	F	I	L	E	A	T	G	D	S	R	A	L	L	E	G	S	E	L	L	R	R	G	G	F	Y	S	V	A	G	V	A	V	P	Q	D	P	V	P	F	K	V	Y	E	W	L	V	L	K	N	A	T	F	K	G	I	W	V	S	D	T	S	H	F
Template Known Secondary structure											T	T	T	S									S	S		T	T																						S													T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	T	A	V	S	W	L	A	N	G	V	I	N	P	L	P	L	L	S	A	E	Y	P	F	T	D	L	E	E	A	L	R	F	A	G	D	K	T	Q	A	A	K	V	Q	L	V
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence	V	K	T	V	S	I	T	S	R	N	Y	Q	L	L	S	K	L	I	T	H	R	L	P	L	K	E	A	N	K	A	L	E	L	M	E	S	R	E	A	.	L	K	V	I	L	Y
Template Known Secondary structure									T						G	G	G							G	G	G										T	T	S		.	S
Template Predicted Secondary structure																																								.
Template SS confidence
	321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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