Job Description P05847 Confidence 9.08% Date Thu Jan 5 10:58:59 GMT 2012 Rank 98 Aligned Residues 47 % Identity 9% Template c2vt1B_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:surface presentation of antigens protein spas; PDBTitle: crystal structure of the cytoplasmic domain of spa40, the2 specificity switch for the shigella flexneri type iii3 secretion system Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		M	Q	K	A	I	D	L	N	R	P	A	C	Q	D	T	G	E	I	.	M	F	F	V	K	V	G	S	R	F	P	L	L	G	E	L	Q	S	I	L	K	Q	A	V	E	E	A	T	V
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		R	K	Y	A	N	E	V	G	I	P	T	V	R	D	V	K	L	A	R	K	L	Y	K	T	H	T	K	Y	S	F	V	D	F	E	H	L	D	E	V	L	R	L	I	V	W	L	E	Q
Template Known Secondary structure								T	T																			S	S					T	T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions