Job Description P28246 Confidence 100.00% Date Thu Jan 5 11:44:30 GMT 2012 Rank 4 Aligned Residues 389 % Identity 10% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		M	T	T	R	Q	H	S	S	F	A	I	V	F	I	L	G	L	L	A	M	L	M	P	L	S	I	D	M	Y	L	P	A	L	P	V	.	I	S	A	Q	F	G	V	P	A	G	S	T	Q	M	T	L	S	T	Y	I	L	G	F	A	L	G	Q	L	I	Y	G	P	M	A	D	S	F	G	R	K	P	V	V	L
Query Conservation																																					.
Alig confidence											.	.	.																								.
Template Conservation											.	.	.
Template Sequence		M	Y	Y	L	K	N	T	N	F	.	.	.	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y	L	L
Template Known Secondary structure							S				.	.	.																																																		T												T	T		T
Template Predicted Secondary structure											.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.				10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	T	L	V	F	A	A	A	A	V	A	C	A	L	A	N	T	I	D	Q	L	I	V	M	R	F	F	H	G	L	A	A	A	A	A	S	V	V	I	N	A	L	M	R	D	I	Y	P	K	E	E	F	S	R	M	M	S	F	V	M	L	V	T	T	I	A	P	L	M	A	P	I	V	G	G	W	V	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	I	I	T	G	M	L	V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A	S	I
Template Known Secondary structure										T								T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.													.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	L	S	W	H	Y	I	F	W	I	L	A	L	A	A	I	L	A	S	A	M	I	F	F	L	.	.	.	.	.	.	.	.	.	.	.	.	I	K	E	T	L	P	P	E	R	R	Q	P	F	H	I	R	T	T	I	G	N	F	A	A	L	F	R	H	K	R	V	L	S	Y	M	L	A	S	G	F	S	F	A
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	I	M	F	T	I	N	N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G	V	S	C	T	Y	D
Template Known Secondary structure																														S	S				S		S	S	S		S	S					S														T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	F	S	F	L	S	A	G	P	F	V	Y	I	E	I	N	H	V	A	P	E	N	F	G	Y	Y	F	A	L	N	I	V	F	L	F	V	M	T	I	F	N	S	R	F	V	R	R	I	G	A	L	N	M	F	R	S	G	L	W	I	Q	F	I	M	A	A	W	M	V	I	S	A	L	L	G	L	G	F	W
Query Conservation
Alig confidence																																																								.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence		V	F	D	Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	.	.	.	.	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	F	A	T	S	A	L
Template Known Secondary structure												T	T	S	S	S																									T	T														.	.	.	.																	T
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																															.																.
Query SS confidence																															.																.
Query Sequence		S	L	V	V	G	V	A	A	F	V	G	C	V	S	M	V	S	S	N	A	M	A	V	I	L	D	E	F	P	.	H	M	A	G	T	A	S	S	L	A	G	T	F	R	F	.	G	I	G	A	I	V	G	A	L	L	S	L	A	T	F	N	S	A	W	P	M	I	W	S	I	A	F	C	A	T	S	S	I	L
Query Conservation																															.																.
Alig confidence																															.																.
Template Conservation
Template Sequence		E	V	V	I	L	K	T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	G	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G	F	T
Template Known Secondary structure																													S		G	G	G										T	T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		386	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	C	L	Y	A	S	R	P	K	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	S	V	F	T	L	S	G	P	G
Template Known Secondary structure								S			S	S
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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