Job Description P28246 Confidence 1.35% Date Thu Jan 5 11:44:30 GMT 2012 Rank 72 Aligned Residues 203 % Identity 9% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.															.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Query Sequence		T	T	R	Q	H	S	S	F	A	I	V	F	I	L	G	L	L	A	M	L	M	P	L	S	I	D	M	Y	L	P	A	L	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	A	Q	F	G	V	P	A	G	S	T	Q	M	T	L	S	T	Y	I	L	G	F	A	L	G	Q	L	I	Y	G	.
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Conservation
Template Sequence		N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N
Template Known Secondary structure		T																																								S		S											T																				T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
											67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	P	M	A	D	S	F	G	R	K	P	V	V	L	G	G	T	L	V	F	A	A	A	A	V	A	C	A	L	A	N	T	I	D	Q	L	I	V	M	R	F	F	H	G	L	A	A	A	A	A	S	V	V	I	N	A	L	M	R	D	I	Y	P	K	E	E	F	S	R	M	M	S
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K
Template Known Secondary structure		T											S	T	T	T																	T		G	G	G	T														T	T													T	T	S	T	T								T	B	S	S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		138	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		F	V	.	.	.	M	L	V	T	T	I	A	P	L	M	A	P	I	V	G	G	W	V	L	V	W	L	S	W	H	Y	I	F	W	I	L	A	L	A	A	I	L	A	S	A	M	I	F	F	L	I	K	E	T	L	P	P	E	R	R	Q	P	F	H	I	R	T	T	I	G
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N	E	D	Y	L	R	P
Template Known Secondary structure		S	T	T		T	B	T	T	B																	T		G	G	G																					T	T	T	S		S			G	G	G	G	G						S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions