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Job DescriptionP76482
Confidence99.79%DateThu Jan 5 12:23:24 GMT 2012
Rank25Aligned Residues234
% Identity14%Templatec3t6mA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of the catalytic domain of dape protein from2 v.cholerea in the zn bound form
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  RSADNIDNLNRSAEYIKEVFVSSGARVTSQDVPITGGPYKNIVADYGPADGPLIIIGAHYDSASSYENDQL. . . . . . . . .
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Template Sequence  SRQSVTPADAGCQDLMIERLKALGFEIESMVF. . . . EDTTNFWARRGTQSP. LFVFAGHTDVVPAGPLSQWHTPPFEPTV
Template Known Secondary structure  TS

BTT

TTTTT
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SSS
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B




GGG
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   126...130.........140......... 150.........160.........170.........180.........190.........
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Query Sequence  . . . . TYTPGADDNASGVAGLLELARLLH. . QQVPKTGVQLVAYASEEPPFFRSDEMGSAVHAASLERPVKLMIALEMIGY
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Template Sequence  IDGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEE. GINGTVRVVETLMAR. . NELIDMCIVGEPSST
Template Known Secondary structure  TTSTTTTTT
TT
SSS
TT.


T..T




S

BS
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Query Sequence  YDSAPGSQNYPYPAMSWLYPDRGDFIAVVGRIQDINAVRQVKAALLSSQDLSVYSMNTPGFIPGIDFSDHLNYWQHDIPA
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Template Sequence  LAVGDVVKNGRRGGGFLTD. . . . . . . . . . . . . TGELLAAVVAAVEEVNHQAPALLTTGGT. . . . . . . SDGRFIAQMGAQV
Template Known Secondary structure  SSTTS

GGGGTS

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   169170.........180....... ..190.........200.........210..... ....220........
 
   280.........290.........300.........310.........320
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Query Sequence  IMITDTAFYRNKQYHLPGDTADRLNYQKMAQVVDGVITLLY
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Template Sequence  VELGPV. . . . NATIHKVNECVRIADLEKLTDMYQKTLNHLL
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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