Job Description P76482 Confidence 99.57% Date Thu Jan 5 12:23:24 GMT 2012 Rank 42 Aligned Residues 266 % Identity 17% Template c3ic1A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase2 from haemophilus influenzae Resolution 2.30 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	Q	L	E	K	T	V	R	Y	L	T	Q	T	V	H	P	R	S	A	D	N	I	D	N	L	N	R	S	A	E	Y	I	K	E	V	F	V	S	S	G	A	R	V	T	S	Q	D	V	P	I	T	G	G	P	Y	K	N	I	V	A	D	Y	G	P	A	D	G	P	L	I	I	I	G	A	H	Y	D	S	A
Query Conservation
Alig confidence																			.	.	.	.	.																												.	.	.	.															.
Template Conservation																			.	.	.	.	.																												.	.	.	.															.
Template Sequence		K	E	K	V	V	S	L	A	Q	D	L	I	R	R	P	S	I	.	.	.	.	.	S	P	N	D	E	G	C	Q	Q	I	I	A	E	R	L	E	K	L	G	F	Q	I	E	W	M	P	F	.	.	.	.	N	D	T	L	N	L	W	A	K	H	G	T	S	E	.	P	V	I	A	F	A	G	H	T	D	V	V
Template Known Secondary structure														T	S			B	.	.	.	.	.	T	T			T	T											T	T	T								B	.	.	.	.	T	T	B								S	S	S	S	.	S										B
Template Predicted Secondary structure																			.	.	.	.	.																												.	.	.	.															.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.						.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.
		118	.	120	.	.	.	.	.	.	.	.	.														130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		S	S	Y	E	N	D	Q	L	T	Y	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	D	D	N	A	S	G	V	A	G	L	L	E	L	A	R	L	L	H	.	.	Q	Q	V	P	K	T	G	V	Q	L	V	A	Y	A	S	E	E	P	P	F	F	R	S	D	E	M	G	S	A	V	H	A	A
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		P	T	G	D	E	N	Q	W	S	S	P	P	F	S	A	E	I	I	D	G	M	L	Y	G	R	G	A	A	D	M	K	G	S	L	A	A	M	I	V	A	A	E	E	Y	V	K	A	N	P	N	H	K	G	T	I	A	L	L	I	T	S	D	E	E	A	T	A	K	D	G	T	I	H	V	V	E	T	L	M	A
Template Known Secondary structure						G	G	G		S	S		T	T	T					T	T				S	T	T	T	T	T	T																			T	T		S	S								S		S	S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		S	L	E	R	P	V	K	L	M	I	A	L	E	M	I	G	Y	Y	D	S	A	P	G	S	Q	N	Y	P	Y	P	A	M	S	W	L	Y	P	D	R	G	D	F	I	A	V	V	G	R	I	Q	D	I	N	A	V	R	Q	V	K	A	A	L	L	S	S	Q	D	L	S	V	Y	S	M	N	T	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence			.																																																																										.	.	.	.	.
Template Conservation			.
Template Sequence		R	.	D	E	K	I	T	Y	C	M	V	G	E	P	S	S	A	K	N	L	G	D	V	V	K	N	G	R	R	G	S	I	T	G	N	L	Y	I	Q	G	I	Q	Y	P	H	L	A	E	N	P	I	H	K	A	A	L	F	L	Q	E	L	T	T	Y	Q	W	D	K	G	N	E	F	F	P	P	T	S	L	Q	I
Template Known Secondary structure		T	.	T													B	S	S	S	T	T	S																									T	T																						B	T	T	B
Template Predicted Secondary structure			.
Template SS confidence
		152		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	I	H	A	G	T	G	S	V	I	P	A	E	L	Y	I	Q	F	N	L	R	Y	C	T	E	V	T	D	E	I	I	K	Q	K	V	A	E	M	L	E	K	H	N	L	K	Y	R	I	E	W	N	L	S	G	K	P	F	L	T	K	P	G	K	L	L	D	S	I	T	S	A	I	E	E	T	I	G	I	T
Template Known Secondary structure														S												T	T	S																T	T																		S	S															S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	F	I	P	G	I	D	F	S	D	H	L	N	Y	W	Q	H	D	I	P	A	I	M	I	T	D	T	A	F	Y	R	N	K	Q	Y	H	L	P	G	D	T	A	D	R	L	N	Y	Q	K	M	A	Q	V	V	D	G	V	I	T	L	L	Y	N
Query Conservation
Alig confidence																														.	.	.	.									.	.	.
Template Conservation																														.	.	.	.									.	.	.
Template Sequence		P	K	A	E	T	G	G	G	T	S	D	G	R	F	I	A	L	M	G	A	E	V	V	E	F	G	P	L	.	.	.	.	N	S	T	I	H	K	V	N	.	.	.	E	C	V	S	V	E	D	L	G	K	C	G	E	I	Y	H	K	M	L	V	N
Template Known Secondary structure									S			S					G	G	G	T								S	B	.	.	.	.		T	T	T	T	S	T	T	.	.	.
Template Predicted Secondary structure																														.	.	.	.									.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.					.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions