Job Description P76482 Confidence 99.55% Date Thu Jan 5 12:23:24 GMT 2012 Rank 43 Aligned Residues 263 % Identity 16% Template c1ysjB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein yxep; PDBTitle: crystal structure of bacillus subtilis yxep protein (apc1829), a2 dinuclear metal binding peptidase from m20 family Resolution 2.40 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		E	Q	L	E	K	T	V	R	Y	L	T	Q	T	V	H	P	R	S	A	D	N	I	D	N	L	N	R	S	A	E	Y	I	K	E	V	F	V	S	S	G	A	R	V	T	S	Q	D	V	P	I	T	G	G	P	Y	K	N	I	V	A	D	Y	G	P	A	D	G	.	P	L	I	I	I	G	A	H	Y	D	S	A
Query Conservation																																																																					.
Alig confidence																												.																					.	.	.	.	.																.
Template Conservation																												.																					.	.	.	.	.
Template Sequence		K	A	F	H	T	R	L	I	N	X	R	R	D	L	H	E	H	P	E	L	S	F	Q	E	V	E	.	T	T	K	K	I	R	R	W	L	E	E	E	Q	I	E	I	L	D	V	P	.	.	.	.	.	Q	L	K	T	G	V	I	A	E	I	K	G	R	E	D	G	P	V	I	A	I	R	A	D	I	D	A	L
Template Known Secondary structure																		S				T	T					.											T	T	T							T	.	.	.	.	.	T		S	S									S															B
Template Predicted Secondary structure																												.																					.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.																											.	.
Query SS confidence										.	.	.	.	.	.																											.	.
Query Sequence		S	S	Y	E	N	D	Q	L	.	.	.	.	.	.	T	Y	T	P	G	A	D	D	N	A	S	G	V	A	G	L	L	E	L	A	R	L	L	H	Q	Q	.	.	V	P	K	T	G	V	Q	L	V	A	Y	A	S	E	E	P	P	F	F	R	S	D	E	M	G	S	A	V	H	A	A	S	L	E	R	P	V	K
Query Conservation										.	.	.	.	.	.																											.	.
Alig confidence										.	.	.	.	.	.																											.	.																													.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		P	I	Q	E	Q	T	N	L	P	F	A	S	K	V	D	G	T	X	H	A	C	G	H	D	F	H	T	A	S	I	I	G	T	A	X	L	L	N	Q	R	R	A	E	L	K	G	T	V	R	F	I	F	Q	P	A	E	E	I	A	A	G	A	R	K	V	L	E	A	G	V	.	.	.	L	N	G	V	S	A	I
Template Known Secondary structure		S					S			T	T			S	S	T	T		B		T	T																	T	T		T	T	T											S		T	T	T	T									T	T	T	.	.	.	T	T	T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	M	I	A	L	E	M	I	G	Y	Y	D	S	A	P	G	S	Q	N	Y	P	Y	P	A	M	S	W	L	Y	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	X	H	N	K	P	D	L	P	V	G	T	I	G	V	K	E	G	P	L	X	A	S	V	D	R	F	E	I	V	I	K	G	K	I	D	P	I	A	A	A	G	Q	I	I	S	G	L	Q	N	A	V	V	S	I	T	R	V	Q	A	G	T	S	W	N	V	I	P	D	Q	A	E	X	E	G	T	V	R	T
Template Known Secondary structure								T	T	S		T	T						S																														T	T														S	S	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
																															221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	D	F	I	A	V	V	G	R	I	Q	D	I	N	A	V	R	Q	V	K	A	A	L	L	S	S	Q	D	L	S	V	Y	S	M	N	T	P	G	F	I	P	G	I	D	F	S	D	H	L	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.
Template Sequence		F	Q	K	E	A	R	Q	A	V	P	E	H	X	R	R	V	A	E	G	I	A	A	G	Y	G	A	Q	A	E	F	K	W	F	P	Y	L	P	S	V	Q	N	D	G	T	F	L	N	A	A	S	E	A	A	A	R	L	G	Y	Q	T	V	H	A	E	Q	S	P	G	.	.	.	.	.	.	.	G	E	D	F	A
Template Known Secondary structure		S	S																						T	T																		G	G	G										T	T	T									B	S	S	.	.	.	.	.	.	.			T
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.								.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	W	Q	H	D	I	P	A	I	M	I	T	D	T	A	F	Y	R	N	K	Q	Y	H	L	P	G	D	T	A	D	R	L	N	Y	Q	K	M	A	Q	V	V	D	G	V	I	T	L	L	Y	N
Query Conservation
Alig confidence																							.					.	.	.
Template Conservation																							.					.	.	.
Template Sequence		L	Y	Q	E	K	I	P	G	F	F	V	W	X	G	T	N	G	T	E	E	W	.	H	H	P	A	.	.	.	F	T	L	D	E	E	A	L	T	V	A	S	Q	Y	F	A	E	L	A	V	I
Template Known Secondary structure					T	T	S												S	S		T	.	T		T	T	.	.	.					T	T
Template Predicted Secondary structure																							.					.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions