Phyre 2 alignment of P76482 with c1vhoA

Job Description P76482
Confidence 99.67% Date Thu Jan 5 12:23:24 GMT 2012

Rank 32 Aligned Residues 240

% Identity 15% Template c1vhoA_

PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:endoglucanase; PDBTitle: crystal structure of a putative peptidase/endoglucanase

Resolution 1.86 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence	L	E	K	T	V	R	Y	L	T	Q	T	V	H	P	R	S	A	D	N	I	D	N	L	N	R	S	A	E	Y	I	K	E	V	F	V	S	S	G	A	R	V	T	S	Q	D	V	P	I	T	G	G	P	Y	K	N	I	V	A	D	Y	G	P	A	D	G	P	L	I	I	I	G	A	H	Y	D	S	A	S	S	Y
Query Conservation
Alig confidence															.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.																													.	.	.	.	.	.	.
Template Sequence	T	G	K	L	L	X	E	L	S	N	L	D	G	P	.	.	.	.	.	S	G	Y	E	T	N	V	V	S	Y	I	K	S	V	I	E	P	F	V	D	E	A	K	T	T	R	H	G	.	.	.	.	.	.	.	S	L	I	G	Y	K	K	G	K	G	I	G	K	L	A	F	F	A	H	V	D	E	I	G	F	V
Template Known Secondary structure											S			B	.	.	.	.	.	T	T														G	G	G		S						T	T	S	.	.	.	.	.	.	.									S	S	S											B
Template Predicted Secondary structure															.	.	.	.	.																													.	.	.	.	.	.	.
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.						.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.								.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.

	121	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	S	K	V	E	G	Q	F	A	R	L	E	P	V	Y	A	S	K	V	R	I	Y	T	K	N	G	I	E	R	G	V	I	G	X	L	A	P	H	L	Q	D	S	E	S	R	K	K	V	P	T	Y	D	E	I	F	V	D	L	S	L	C	E	R	G	V	R	V	G	D	I	A	V	I	D	Q	T	A	F	E	T
Template Known Secondary structure						T	T																	T	T							T	T				S										T	S			T	T						G	G	G	S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

	124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	L	T	Y	T	P	G	A	D	D	N	A	S	G	V	A	G	L	L	E	L	A	R	L	L	H	Q	Q	V	P	K	T	G	V	Q	L	V	A	Y	A	S	E	E	P	P	F	F	R	S	D	E	M	G	S	A	V	H	A	A	S	L	E	R	P	V	K	L	M	I	A	L	E	M	I	G	Y	Y	D	S	A
Query Conservation
Alig confidence																																																				.	.	.	.	.
Template Conservation																																																				.	.	.	.	.
Template Sequence	N	G	K	V	V	G	K	A	L	D	N	R	A	S	C	G	V	L	V	K	V	L	E	F	L	K	R	Y	D	H	P	W	D	V	Y	V	V	F	S	V	Q	E	E	T	G	C	L	G	A	L	T	.	.	.	.	.	G	A	Y	E	I	N	P	D	A	A	I	V	X	D	V	T	F	A	S	E	P	P	F	S
Template Known Secondary structure	T	T					T	T																		T	T				S	S									T	T	S	S	S							.	.	.	.	.	T	T						S													T	T	S
Template Predicted Secondary structure																																																				.	.	.	.	.
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.						.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

	204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	G	S	Q	N	Y	P	Y	P	A	M	S	W	L	Y	P	D	R	G	D	F	I	A	V	V	G	R	I	Q	D	I	N	A	V	R	Q	V	K	A	A	L	L	S	S	Q	D	L	S	V	Y	S	M	N	T	P	G	F	I	P	G	I	D	F	S	D	H	L	N	Y	W	Q	H	D	I	P	A	I	M	I	T
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Sequence	D	H	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	K	G	P	V	I	G	L	G	P	V	V	D	R	N	L	V	Q	K	I	I	E	I	A	K	K	H	N	V	S	L	Q	E	E	A	V	G	.	.	.	.	.	.	G	R	T	D	F	V	Q	L	V	R	N	G	V	R	T	S	L	I	S
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S							S	T	T	S															T	T							S	S		.	.	.	.	.	.				T	T						T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
	236	.	.	.														240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

	284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	T	A	F	Y	R	N	K	Q	Y	H	L	P	G	D	T	A	D	R	L	N	Y	Q	K	M	A	Q	V	V	D	G	V	I	T	L	L	Y	N	S	K
Query Conservation
Alig confidence				.	.	.	.								.	.	.
Template Conservation				.	.	.	.								.	.	.
Template Sequence	I	P	L	.	.	.	.	K	Y	X	H	T	P	V	.	.	.	E	X	V	D	P	R	D	V	E	E	L	A	R	L	L	S	L	V	A	V	E	L	E
Template Known Secondary structure				.	.	.	.	B	S	T	T	S	T	T	.	.	.
Template Predicted Secondary structure				.	.	.	.								.	.	.
Template SS confidence
	301	.	.					.	.	.	.	.	.	310				.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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