Job Description P76482 Confidence 99.37% Date Thu Jan 5 12:23:24 GMT 2012 Rank 57 Aligned Residues 248 % Identity 19% Template c1vheA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:aminopeptidase/glucanase homolog; PDBTitle: crystal structure of a aminopeptidase/glucanase homolog Resolution 1.90 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		E	Q	L	E	K	T	V	R	Y	L	T	Q	T	V	H	P	R	S	A	D	N	I	D	N	L	N	R	S	A	E	Y	I	K	E	V	F	V	S	S	G	A	R	V	T	S	Q	D	V	P	I	T	G	G	P	Y	K	N	I	V	A	D	Y	G	P	A	.	D	G	P	L	I	I	I	G	A	H	Y	D	S	A
Query Conservation																																																																			.
Alig confidence																		.	.	.	.	.																													.	.	.	.	.	.	.										.
Template Conservation																		.	.	.	.	.																													.	.	.	.	.	.	.
Template Sequence		D	E	T	L	T	X	L	K	D	L	T	D	A	K	G	I	.	.	.	.	.	P	G	N	E	R	E	V	R	Q	V	X	K	S	Y	I	E	P	F	A	D	E	V	T	T	D	R	L	G	.	.	.	.	.	.	.	S	L	I	A	K	K	T	G	A	E	N	G	P	K	I	X	I	A	G	H	L	D	E	V
Template Known Secondary structure														S				.	.	.	.	.	T	T														G	G	G		S						T	T		.	.	.	.	.	.	.								S	S	T	T	S
Template Predicted Secondary structure																		.	.	.	.	.																													.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20						.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.								.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		118	.	120	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	Y	E	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	X	V	T	Q	I	T	D	K	G	F	I	R	F	Q	T	V	G	G	W	W	A	Q	V	X	L	A	Q	R	V	T	I	V	T	K	K	G	E	I	T	G	V	I	G	S	K	P	P	H	I	L	S	P	E	A	R	K	K	S	V	E	I	K	D	X	F	I	D	I	G	A	S	S	R	E	E	A	L	E
Template Known Secondary structure										T	T	S								S				G	G	G	T	T	T								T	T												G	G	G	S		T	T	T	T	T	S				G	G	G						S		S	S
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
																						124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	T	Y	T	P	G	A	D	D	N	A	S	G	V	A	G	L	L	E	L	A	R	L	L	H	Q	Q	V	P	K	T	G	V	Q	L	V	A	Y	A	S	E	E	P	P	F	F	R	S	D	E	M	G	S	A	V	H	A	A	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		W	G	V	L	P	G	D	X	I	V	P	H	F	E	F	T	V	X	N	N	E	K	F	L	L	A	K	A	W	D	N	R	I	G	C	A	I	A	I	D	V	L	R	N	L	Q	N	T	D	H	P	N	I	V	Y	G	V	G	T	V	Q	E	E	V	G	L	R	G	A	K	T	A	A	H	T	I	.	.	.	Q
Template Known Secondary structure		T	T			T	T													S	S	T	T					T	T																			T	S			S	S								S			T	T	T	S											.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	R	P	V	K	L	M	I	A	L	E	M	I	G	Y	Y	D	S	A	P	G	S	Q	N	Y	P	Y	P	A	M	S	W	L	Y	P	D	R	G	D	F	I	A	V	V	G	R	I	Q	D	I	N	A	V	R	Q	V	K	A	A	L	L	S	S	Q	D	L	S	V	Y	S	M	N	T	P	G	F	I	P	G
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.																														.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.																														.	.	.	.
Template Sequence		P	D	I	A	F	G	V	D	V	G	I	A	G	D	T	P	G	I	S	E	K	E	A	Q	S	K	X	G	K	G	P	Q	I	I	V	Y	D	A	S	X	.	.	.	.	.	.	.	V	S	H	K	G	L	R	D	A	V	V	A	T	A	E	E	A	G	I	P	Y	Q	F	D	A	I	A	G	G	.	.	.	.
Template Known Secondary structure			S													S	T	T			T	T	T					T	T	S									T	T		.	.	.	.	.	.	.																		T									T	T		.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.																														.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.								270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		I	D	F	S	D	H	L	N	Y	W	Q	H	.	.	D	I	P	A	I	M	I	T	D	T	A	F	Y	R	N	K	Q	Y	H	L	P	G	D	T	A	D	R	L	N	Y	Q	K	M	A	Q	V	V	D	G	V	I	T	L	L	Y	N
Query Conservation														.	.
Alig confidence		.	.											.	.												.	.	.	.								.	.	.
Template Conservation		.	.																								.	.	.	.								.	.	.
Template Sequence		.	.	G	T	D	S	G	A	I	H	L	T	A	N	G	V	P	A	L	S	I	T	I	A	T	.	.	.	.	R	Y	I	H	T	H	A	.	.	.	A	X	L	H	R	D	D	Y	E	N	A	V	K	L	I	T	E	V	I	K	K
Template Known Secondary structure		.	.			T					T	T	S	T	T												.	.	.	.	B	S	T	T	S	S		.	.	.
Template Predicted Secondary structure		.	.																								.	.	.	.								.	.	.
Template SS confidence
				299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.					.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions