Job Description P76482 Confidence 99.66% Date Thu Jan 5 12:23:24 GMT 2012 Rank 33 Aligned Residues 261 % Identity 16% Template c1vgyB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of succinyl diaminopimelate desuccinylase Resolution 1.90 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	E	Q	L	E	K	T	V	R	Y	L	T	Q	T	V	H	P	R	S	A	D	N	I	D	N	L	N	R	S	A	E	Y	I	K	E	V	F	V	S	S	G	A	R	V	T	S	Q	D	V	P	I	T	G	G	P	Y	K	N	I	V	A	D	Y	G	P	A	D	G	P	L	I	I	I	G	A	H	Y	D	S
Query Conservation
Alig confidence																				.	.	.	.	.																												.	.	.	.											.
Template Conservation																				.	.	.	.	.																												.	.	.	.											.
Template Sequence		T	E	T	Q	S	L	E	L	A	K	E	L	I	S	R	P	S	V	.	.	.	.	.	T	P	D	D	R	D	C	Q	K	L	X	A	E	R	L	H	K	I	G	F	A	A	E	E	X	H	F	.	.	.	.	G	N	T	K	N	I	W	L	R	R	.	G	T	K	A	P	V	V	C	F	A	G	H	T	D	V
Template Known Secondary structure				S											T	S			B	.	.	.	.	.	T	T			T	T											T	T	T								B	.	.	.	.	T	T	B								.		S	S	S	S										B
Template Predicted Secondary structure																				.	.	.	.	.																												.	.	.	.											.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.						20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		117	.	.	120	.	.	.	.	.	.	.	.	.														130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		A	S	S	Y	E	N	D	Q	L	T	Y	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	D	D	N	A	S	G	V	A	G	L	L	E	L	A	R	L	L	H	.	.	Q	Q	V	P	K	T	G	V	Q	L	V	A	Y	A	S	E	E	P	P	F	F	R	S	D	E	M	G	S	A	V	H	A
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		V	P	T	G	P	V	E	K	W	D	S	P	P	F	E	P	A	E	R	D	G	R	L	Y	G	R	G	A	A	D	X	K	T	S	I	A	C	F	V	T	A	C	E	R	F	V	A	K	H	P	N	H	Q	G	S	I	A	L	L	I	T	S	D	E	E	G	D	A	L	D	G	T	T	K	V	V	D	V	L	K
Template Known Secondary structure						S	G	G	G	S	S	S		T	T	S					T	T				S	T	T	T	T	T	T																			T	T		S	S								S		S	S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	L	E	R	P	V	K	L	M	I	A	L	E	M	I	G	Y	Y	D	S	A	P	G	S	Q	N	Y	P	Y	P	A	M	S	W	L	Y	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		A	R	.	D	E	L	I	D	Y	C	I	V	G	E	P	T	A	V	D	K	L	G	D	X	I	K	N	G	R	R	G	S	L	S	G	N	L	T	V	K	G	K	Q	G	H	I	A	Y	P	H	L	A	I	N	P	V	H	T	F	A	P	A	L	L	E	L	T	Q	E	V	W	D	E	G	N	E	Y	F	P	P
Template Known Secondary structure			T	.	T													B	S	S	S	T	T	S																			B				T	T		G	G	G		B																							S	S
Template Predicted Secondary structure				.
Template SS confidence
		152	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
																																																										221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	D	F	I	A	V	V	G	R	I	Q	D	I	N	A	V	R	Q	V	K	A	A	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	F	Q	I	S	N	I	N	G	G	T	G	A	T	N	V	I	P	G	E	L	N	V	K	F	N	F	R	F	S	T	E	S	T	E	A	G	L	K	Q	R	V	H	A	I	L	D	K	H	G	V	Q	Y	D	L	Q	W	S	C	S	G	Q	P	F	L	T	Q	A	G	K	L	T	D	V	A	R	A	A	I
Template Known Secondary structure														S		T	T				S												T	T	S																T	T																		S	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	S	Q	D	L	S	V	Y	S	M	N	T	P	G	F	I	P	G	I	D	F	S	D	H	L	N	Y	W	Q	H	D	I	P	A	I	M	I	T	D	T	A	F	Y	R	N	K	Q	Y	H	L	P	G	D	T	A	D	R	L	N	Y	Q	K	M	A	Q	V	V	D	G	V	I	T	L	L	Y	N
Query Conservation
Alig confidence																	.	.	.	.	.	.																					.	.	.	.									.	.	.
Template Conservation																	.	.	.	.	.	.																					.	.	.	.									.	.	.
Template Sequence		A	E	T	C	G	I	E	A	E	L	S	T	T	G	G	.	.	.	.	.	.	T	S	D	G	R	F	I	K	A	X	A	Q	E	L	I	E	L	G	P	S	.	.	.	.	N	A	T	I	H	Q	I	N	.	.	.	E	N	V	R	L	N	D	I	P	K	L	S	A	V	Y	E	G	I	L	V	R
Template Known Secondary structure						S	S								S		.	.	.	.	.	.			T					G	G	G									S	B	.	.	.	.		T	T	T	T	S	T	T	.	.	.					T	T
Template Predicted Secondary structure																	.	.	.	.	.	.																					.	.	.	.									.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.							.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.					.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions