Return to main results Retrieve Phyre Job Id

Job DescriptionP0AF28
Confidence99.90%DateThu Jan 5 11:24:59 GMT 2012
Rank6Aligned Residues196
% Identity27%Templatec3q9sA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.........70.........80.......
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFS
Query Conservation   





       
   
        
  
    


        






 
    
                    
Alig confidence 






















..











































.









Template Conservation 






       
   
   
..  
       


        
 

 
                 .     

 

Template Sequence  RILVIEDDHDIANVLRXDLTDAG. . YVVDHADSAXNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRK. NSALPIIVLT
Template Known Secondary structure 
S
TTT..
SSS

S

S
T.T



Template Predicted Secondary structure 




..














.








Template SS confidence 















































































   5....10.........20....... ..30.........40.........50.........60.........70. ........80.
 
   88.90.........100.........110.........120.........130.........140.........150.........160.......
Predicted Secondary structure 








































































Query SS confidence 















































































Query Sequence  VSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERDILKLI
Query Conservation                                                                      

  
  

   
Alig confidence 








































.





































Template Conservation            
   

   
 

     
   
        .                          
   
      
Template Sequence  ARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT. SESLSXGDLTLDPQKRLVTYKGEELRLSPKEFDILALL
Template Known Secondary structure  S

ST
SSS





.S

TTTTTTTT


Template Predicted Secondary structure 




















.
























Template SS confidence 















































































   82.......90.........100.........110.........120.. .......130.........140.........150.........160
 
   168.170 .........180 .........190.........200.......
Predicted Secondary structure 


....

.....







Query SS confidence 


. . . .









. . . . .


























Query Sequence  AQG. . . . LPNKMIARRL. . . . . DITESTVKVHVKHMLKKMKLKSRVEAA
Query Conservation    
.... 
 



  
..... 

  

  

  
  

 
  
 

 
Alig confidence 


....









.....


























Template Conservation          
   
   
         


  

 


 

        
Template Sequence  IRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHXANLRAKLRDLDGYGLL
Template Known Secondary structure  STT



TT
S
TT
S


S


SS
Template Predicted Secondary structure 





















Template SS confidence 
















































   161........170.........180.........190.........200.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions