Return to main results Retrieve Phyre Job Id

Job DescriptionP0AF28
Confidence95.00%DateThu Jan 5 11:24:59 GMT 2012
Rank154Aligned Residues172
% Identity17%Templatec3p7nB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:sensor histidine kinase; PDBTitle: crystal structure of light activated transcription factor el222 from2 erythrobacter litoralis
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100.........110.........120...
Predicted Secondary structure 

























































Query SS confidence 















































































Query Sequence  GIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQA
Query Conservation 

        






 
    
                                                        
Alig confidence 















































































Template Conservation 
       
  
 
 
    

 
   
 
   
 
    
  
                                    
Template Sequence  VLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNY
Template Known Secondary structure  T
SS
TTSTT





TTS
GGGGB
TTS
TT

Template Predicted Secondary structure 






































Template SS confidence 















































































   2930.........40.........50.........60.........70.........80.........90.........100........
 
   124.....130.........140...... ...150.........160.........170.........180........
Predicted Secondary structure 



















...............




























Query SS confidence 






















. . . . . . . . . . . . . . .









































Query Sequence  AAGEMVLSEALTPVLAASLRANR. . . . . . . . . . . . . . . ATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVK
Query Conservation                         ...............         

  
  

     
 
 



  
 

  

 
Alig confidence 






















...............









































Template Conservation                                                        
                
        
Template Sequence  KKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVGMARRERAAEMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVK
Template Known Secondary structure 
TTS
TTTT

TTS
TT

T

Template Predicted Secondary structure 









































Template SS confidence 















































































   109110.........120.........130.........140.........150.........160.........170.........180........
 
   189190.........200.........210.....
Predicted Secondary structure 







Query SS confidence 


























Query Sequence  VHVKHMLKKMKLKSRVEAAVWVHQERI
Query Conservation   

  
  

 
  
 

   
   

Alig confidence 


























Template Conservation         


 

 


  

  

 
Template Sequence  MHRGLVMEKLNLKTSADLVRIAVEAGI
Template Known Secondary structure  TT

STT
Template Predicted Secondary structure 









Template SS confidence 


























   196...200.........210.........220..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions