Job Description P0AF28 Confidence 99.48% Date Thu Jan 5 11:24:59 GMT 2012 Rank 71 Aligned Residues 117 % Identity 32% Template c3nhzA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	N	Q	E	P	A	T	I	L	L	I	D	D	H	P	M	L	R	T	G	V	K	Q	L	I	S	M	A	P	D	I	T	V	V	G	E	A	S	N	G	E	Q	G	I	E	L	A	E	S	L	D	P	D	L	I	L	L	D	L	N	M	P	G	M	N	G	L	E	T	L	D	K	L	R	E	K	S	L	S
Query Conservation
Alig confidence					.	.	.	.																								.	.																																													.
Template Conservation					.	.	.	.																								.	.																																													.
Template Sequence		M	R	Q	.	.	.	.	R	I	L	V	V	D	D	D	A	S	L	A	E	M	L	T	I	V	L	R	G	E	G	.	.	F	D	T	A	V	I	G	D	G	T	Q	A	L	T	A	V	R	E	L	R	P	D	L	V	L	L	D	L	M	L	P	G	M	N	G	I	D	V	C	R	V	L	R	A	.	D	S	G
Template Known Secondary structure					.	.	.	.							S															T	T	.	.									G	G	G											S						S	S		S	S	S												.
Template Predicted Secondary structure					.	.	.	.																								.	.																																													.
Template SS confidence
		4	.	.					.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	I	V	V	F	S	V	S	N	H	E	E	D	V	V	T	A	L	K	R	G	A	D	G	Y	L	L	K	D	M	E	P	E	D	L	L	K	A	L	H	Q	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	I	V	M	L	T	A	K	T	D	T	V	D	V	V	L	G	L	E	S	G	A	D	D	Y	I	M	K	P	F	K	P	K	E	L	V	A	R	V	R	A	R	L
Template Known Secondary structure										T	T		S	S								T	T								S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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