Return to main results Retrieve Phyre Job Id

Job DescriptionP0AF28
Confidence99.52%DateThu Jan 5 11:24:59 GMT 2012
Rank57Aligned Residues127
% Identity27%Templatec3f6cB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
Resolution1.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVV
Query Conservation   
 





       
   
        
  
    


        






 
    
                  
Alig confidence 
























.





















































Template Conservation 








       
   
   
.  

        
         
 

 
  
    
               

 
Template Sequence  SLNAIIIDDHPLAIAAIRNLLIKND. IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII
Template Known Secondary structure 



TT.SSSTT

STT
SSS
TT

S
Template Predicted Secondary structure 






.






















Template SS confidence 















































































   0.........10.........20.... .....30.........40.........50.........60.........70........
 
   86...90.........100.........110.........120.........130....
Predicted Secondary structure 









































Query SS confidence 
















































Query Sequence  FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEAL
Query Conservation                                                   
Alig confidence 



.











































Template Conservation   
  .           
    
 

     
   
  
  
       
Template Sequence  VSAK. DHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSL
Template Known Secondary structure 

.

STTT
SGGG
TTT

B




Template Predicted Secondary structure 

.
















Template SS confidence 
















































   7980.. .......90.........100.........110.........120......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions