Job Description P0AF28 Confidence 99.94% Date Thu Jan 5 11:24:59 GMT 2012 Rank 5 Aligned Residues 206 % Identity 19% Template c1kgsA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima Resolution 1.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	I	L	L	I	D	D	H	P	M	L	R	T	G	V	K	Q	L	I	S	M	A	P	D	I	T	V	V	G	E	A	S	N	G	E	Q	G	I	E	L	A	E	S	L	D	P	D	L	I	L	L	D	L	N	M	P	G	M	N	G	L	E	T	L	D	K	L	R	E	K	S	L	S	G	R	I	V	V	F
Query Conservation
Alig confidence																										.	.
Template Conservation																										.	.
Template Sequence		V	R	V	L	V	V	E	D	E	R	D	L	A	D	L	I	T	E	A	L	K	K	E	X	.	.	F	T	V	D	V	C	Y	D	G	E	E	G	X	Y	X	A	L	N	E	P	F	D	V	V	I	L	D	I	X	L	P	V	H	D	G	W	E	I	L	K	S	X	R	E	S	G	V	N	T	P	V	L	X	L
Template Known Secondary structure									S	S														T	T	.	.							S	S											S			S						S			S	S	S												T	T
Template Predicted Secondary structure																										.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		S	V	S	N	H	E	E	D	V	V	T	A	L	K	R	G	A	D	G	Y	L	L	K	D	M	E	P	E	D	L	L	K	A	L	H	Q	A	A	A	G	E	M	V	L	S	E	A	L	T	P	V	.	.	L	A	A	S	L	R	A	N	R	A	T	T	E	R	D	V	N	Q	L	T	P	R	E	R	D	I	L
Query Conservation																																																					.	.
Alig confidence																																																					.	.
Template Conservation
Template Sequence		T	A	L	S	D	V	E	Y	R	V	K	G	L	N	X	G	A	D	D	Y	L	P	K	P	F	D	L	R	E	L	I	A	R	V	R	A	L	I	R	R	K	S	E	S	K	S	T	K	L	V	C	G	D	L	I	L	D	T	A	T	K	K	A	Y	R	G	S	K	E	I	D	L	T	K	K	E	Y	Q	I	L
Template Known Secondary structure			S	S									T						S					S	S																				S		S	S					T	T					T	T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		165	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		K	L	I	A	.	.	.	.	Q	G	L	P	N	K	M	I	A	R	R	L	D	I	T	E	S	T	V	K	V	H	V	K	H	M	L	K	K	M	K	L	K	S	R	V	E	A	A	V	W	V	H	Q	E	R
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.
Template Conservation
Template Sequence		E	Y	L	V	X	N	K	N	R	V	V	T	K	E	E	L	Q	E	H	L	W	V	F	S	D	V	L	R	S	H	I	K	N	L	R	K	K	V	D	K	G	F	K	K	K	I	I	H	T	V	R	G	I	G
Template Known Secondary structure							T	T	T	S																															T	T		S	S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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