Job Description P0AF28 Confidence 99.69% Date Thu Jan 5 11:24:59 GMT 2012 Rank 16 Aligned Residues 70 % Identity 21% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	T	T	E	R	D	V	N	Q	L	T	P	R	E	R	D	I	L	K	L	I	A	Q	G	L	P	N	K	M	I	A	R	R	L	D	I	T	E	S	T	V	K	V	H	V	K	H	M	L	K	K	M	K	L	K	S	R	V	E	A	A	V	W	V	H	Q	E	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	P	T	A	E	D	A	A	W	L	D	P	K	E	A	T	Y	L	R	W	I	A	V	G	K	T	X	E	E	I	A	D	V	E	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D	V	R	S	K	A	H	L	T	A	L	A	I	R	R	K	L
Template Known Secondary structure					S		B																	T	T	T										T	T																		T		S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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