Job Description P75824 Confidence 100.00% Date Thu Jan 5 12:14:39 GMT 2012 Rank 3 Aligned Residues 251 % Identity 20% Template c1ep3B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. Resolution 2.10 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																														.																				.
Query SS confidence																														.																				.
Query Sequence		N	Q	C	P	W	R	M	Q	V	H	H	I	T	Q	E	T	P	D	V	W	T	I	S	L	I	C	H	D	.	Y	Y	P	Y	R	A	G	Q	Y	A	L	V	S	V	R	N	S	A	E	.	T	L	R	A	Y	T	I	S	S	T	P	G	V	S	E	Y	I	T	L	T	V	R	R	I	D	D	G	V	G	S	Q
Query Conservation																														.																				.
Alig confidence																														.																				.
Template Conservation
Template Sequence		S	Q	L	Q	E	M	M	T	V	V	S	Q	R	E	V	A	Y	N	I	F	E	M	V	L	K	G	T	L	V	D	E	M	D	L	P	G	Q	F	L	H	L	A	V	P	N	G	A	M	L	L	R	R	P	I	S	I	S	S	W	D	K	R	A	K	T	C	T	I	L	Y	R	I	G	D	E	T	T	G	T	Y
Template Known Secondary structure				S														T	T								S	G	G	G	G	G			S	T	T								S		T	T			S											T	T	T	T											T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		W	L	T	R	D	V	K	R	G	D	Y	L	W	L	S	D	A	M	G	E	F	T	.	.	C	D	D	K	A	E	D	K	F	L	L	L	A	A	G	C	G	V	T	P	I	M	S	M	R	R	W	L	A	K	N	R	P	Q	A	D	V	R	V	I	Y	N	V	R	T	P	Q	D	V	I	F	A	D	E	W	R
Query Conservation																								.	.
Alig confidence					.																			.	.																																	.	.
Template Conservation					.																																																					.	.
Template Sequence		K	L	S	.	K	L	E	S	G	A	K	V	D	V	M	G	P	L	G	N	G	F	P	V	A	E	V	T	S	T	D	K	I	L	I	I	G	G	G	I	G	V	P	P	L	Y	E	L	A	K	Q	L	E	K	T	G	.	.	C	Q	M	T	I	L	L	G	F	A	S	E	N	V	K	I	L	E	N	E	F	S
Template Known Secondary structure					.	T			T	T										S	B					T	T			T	T	S								G	G	G	S														T	.	.										S	S	G	G	G
Template Predicted Secondary structure					.																																																					.	.
Template SS confidence
		82	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		162	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		N	Y	.	P	V	T	L	V	A	E	N	N	V	T	E	G	F	I	A	G	R	L	T	R	E	L	L	A	G	V	P	D	L	A	S	R	T	V	M	T	C	G	P	A	P	Y	M	D	W	V	E	Q	E	V	K	A	L	G	V	T	R	F	F	K	E	K	F	F	T	P	V	A	E	A	A	T	S	G	L	K
Query Conservation				.
Alig confidence				.																													.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	K	N	V	T	L	K	I	A	T	D	D	G	S	Y	G	T	K	G	H	V	G	M	L	M	N	E	I	D	F	.	.	E	V	D	A	L	Y	T	C	G	A	P	A	M	L	K	A	V	A	K	K	Y	D	Q	L	E	R	L	Y	I	S	M	E	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S	T	T								T	T		S	S	S			S											S	.	.			S						S												T	T	T		S	S									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.
Query SS confidence																																																						.	.	.	.
Query Sequence		F	T	K	L	Q	P	A	R	E	F	Y	A	P	V	G	T	T	L	L	E	A	L	E	S	N	N	V	P	V	V	A	A	C	R	A	G	V	C	G	C	C	K	T	K	V	V	S	G	E	Y	T	V	.	.	.	.	S	S	T	M	T	L	T	D	A	E	I	A
Query Conservation																																																						.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	A	C	G	I	G	A	C	Y	A	C	V	E	H	D	K	E	D	E	S	H	A	L	K	V	C	E	D	G	P	V	F	L	G	K	Q	L	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	S	S	S	S		T	T					T	T								T	T	T	T		B			B	T	T	T	T	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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