Job Description P03018 Confidence 99.88% Date Thu Jan 5 10:57:53 GMT 2012 Rank 24 Aligned Residues 157 % Identity 38% Template c3dmnA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dna helicase; PDBTitle: the crystal structure of the c-terminal domain of a possilbe dna2 helicase from lactobacillus plantarun wcfs1 Resolution 1.66 Å

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		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	R	S	T	S	N	I	L	S	A	A	N	A	L	I	E	N	N	N	G	R	L	G	K	K	L	W	T	D	G	A	D	G	E	P	I	S	L	Y	C	A	F	N	E	L	D	E	A	R	F	V	V	N	R	I	K	T	W	Q	D	N	G	G	A	L	A	E	C	A	I	L	Y	R	S	N	A	Q	S	R
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Sequence		S	Y	R	S	T	Q	Q	I	T	D	F	T	K	E	I	L	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	G	D	L	P	N	V	V	V	T	P	N	F	E	A	G	V	D	Q	V	V	D	Q	L	A	X	N	D	S	.	.	.	E	R	D	T	T	A	I	I	G	K	S	L	A	E	C	E
Template Known Secondary structure															T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.												S	S																		.	.	.	T	T								S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template SS confidence
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.														.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.				.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	E	E	A	L	L	Q	A	S	M	P	Y	R	I	Y	G	G	M	R	F	F	E	R	Q	E	I	K	D	A	L	S	Y	L	R	L	I	A	N	R	N	D	D	A	A	F	E	R	V	V	N	T	P	T	R	G	I	G	D	R	T	L	D	V	V	R	Q	T	S	R	D	R	Q	L	T	L	W	Q	A	C
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	T	K	A	L	K	A	R	G	E	Q	V	T	L	I	Q	T	E	N	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T	T							S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		669	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	L	L	Q	E	K	A	L	A	G	R	A	A	S	A	L	Q	R	F	M	E	L	I	D	A	L	A	Q	E	T	A	D	M	P	L	H	V	Q	T	D	R	V	I	K	D	S	G	L	R	T	M	Y	E	Q	E	K	G	E	K	G	Q	T	R	I	E	N	L	E	E	L	V	T	A	T	R	Q	F	S	Y
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	E	D	E	D	L	M	P	L	Q	A	F	L	S	H	A	A	L	E	A	G	E	G	Q	A	D	T	W	Q	D	A	V	Q	L	M	T	L	H	S	A	K	G	L	E	F	P	Q	V	F	I	V	G	M	E	E	G	M	F	P	S	Q	M	S	L	D	E	G	G	R	L	E	E	E	R	R	L	A	Y	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	G	V	I	V	V	P	S	F	L	A	K	G	L	E	F	D	A	V	I	V	W	N	A	N	Q	E	N	Y	Q	R	.	.	.	.	.	.	.	.	.	.	E	D	E	R	Q	L	L	Y	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S						G	G	G		T	T										T		B	T	T	T	S		S	.	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																															692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.											.	.	.	.	.	.	730	.	.
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	T	R	A	M	Q	K	L	T	L	T	Y	A	E	T	R	R	L	Y	G	K	E	V	Y	H	R	P	S	R	F	I	G	E	L	P	E	E	C	V	E
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	C	S	R	A	X	H	E	L	T	L	V	A	V	.	.	.	.	.	.	.	.	.	.	.	G	S	L	S	P	L	L	A	R	V	N	H	A	L	Y	T
Template Known Secondary structure				T	T											.	.	.	.	.	.	.	.	.	.	.	S	S	B		G	G	G	T	T	S		G	G	G	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		733	.	.	.	.	.	.	740	.	.	.	.	.	.												.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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