Return to main results Retrieve Phyre Job Id

Job DescriptionP03018
Confidence100.00%DateThu Jan 5 10:57:53 GMT 2012
Rank1Aligned Residues652
% Identity99%Templatec2is6B_
PDB info PDB header:hydrolase/dnaChain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  DVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS
Query Conservation          

  
  

       

 
 





  
  


 

         

 



  

 

  

   
   
Alig confidence 















































































Template Conservation          
  

  

       

 
 





  
   
  

         


 
 
  
   
  

       
Template Sequence  DVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS
Template Known Secondary structure 
T

T

SS


TTSSTS


GGGSSTTT
Template Predicted Secondary structure 
























Template SS confidence 















































































   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQS
Query Conservation       
 



    


             
 
       
                      
   
           
Alig confidence 















































































Template Conservation       
 
  
     
                                                               
Template Sequence  QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHINP
Template Known Secondary structure  TTT
TT

TT

TT

TTTS
TT

S



Template Predicted Secondary structure 



























Template SS confidence 















































































   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
Predicted Secondary structure 



















Query SS confidence 















































































Query Sequence  YGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTG
Query Conservation             
   
   
      
  

      

                
 


 

    
  

  
     
Alig confidence 

....









































































Template Conservation    ....                                
                
 


 

    
   
  
     
Template Sequence  VE. . . . QTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTG
Template Known Secondary structure  ....T


SSGGG

TTT
Template Predicted Secondary structure  ....


















Template SS confidence 















































































   166. ..170.........180.........190.........200.........210.........220.........230.........240.
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  KVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLY
Query Conservation   
  


  
 

  


       
           
  



   
   

  
                        
Alig confidence 















































































Template Conservation       

  
 
                         
    

   
                                
Template Sequence  KVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLY
Template Known Secondary structure 
GGG


GGGT

TSTT


B

SS
TTSTT





B
SS


S
Template Predicted Secondary structure 





































Template SS confidence 















































































   242.......250.........260.........270.........280.........290.........300.........310.........320.
 
   322.......330.........340.........350.........360.........370.........380.........390.........400.
Predicted Secondary structure 






















Query SS confidence 















































































Query Sequence  CAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANR
Query Conservation         

  

  
  
   
    




 
           
    
               
   
  
      
Alig confidence 















































































Template Conservation             
   
  
        




 
           
                                  
Template Sequence  CAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIVNR
Template Known Secondary structure  SSTT

GGGSSGGGTT


SSS
GGGS
T
Template Predicted Secondary structure 



























Template SS confidence 















































































   322.......330.........340.........350.........360.........370.........380.........390.........400.
 
   402.......410.........420.........430.........440.........450.........460.........470.........480.
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  NDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQT
Query Conservation          

      
       
                               
      
  
             
Alig confidence 















































































Template Conservation           
              
                                                       
Template Sequence  NDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQT
Template Known Secondary structure  T
TTSS

S

TS
TT
S
TTTS
Template Predicted Secondary structure 






















Template SS confidence 















































































   402.......410.........420.........430.........440.........450.........460.........470.........480.
 
   482.......490.........500.........510.........520.........530.........540.........550.........560.
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  DRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHS
Query Conservation    
         
              
  
                  
   
                  
 
 


 
Alig confidence 










































.....































Template Conservation                             
               ..... 
   
                  
 
 


 
Template Sequence  DRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSEDLM. . . . . PLQAFLSHAALEAGEGQADTWQDAVQLMTLHS
Template Known Secondary structure  TSS
TTTS



S
.....TGGG
S


S


Template Predicted Secondary structure 









.....












Template SS confidence 















































































   482.......490.........500.........510.........520.... .....530.........540.........550......
 
   562.......570.........580.........590.........600.........610.........620.........630.........640.
Predicted Secondary structure 











































Query SS confidence 















































































Query Sequence  AKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECV
Query Conservation 






 
 
 
  

  
          
 




 







  
 
                

 

 

     
Alig confidence 















































































Template Conservation 




 
 


        
          
 




 


 



  
 
                

 

  
     
Template Sequence  AKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECV
Template Known Secondary structure  TT




BTBBTTBGGGGSSTTTTS
TT


B
S
TTT
Template Predicted Secondary structure 









































Template SS confidence 















































































   562.......570.........580.........590.........600.........610.........620.........630.........640.
 
   642.......650.........660..
Predicted Secondary structure 

















Query SS confidence 




















Query Sequence  EEVRLRATVSRPVSHQRMGTP
Query Conservation                       
Alig confidence 




















Template Conservation                       
Template Sequence  EEVRLRATVSRPVSHQRMGTP
Template Known Secondary structure 

SSSS












Template Predicted Secondary structure 
















Template SS confidence 




















   642.......650.........660..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions