Job Description P0AAN3 Confidence 99.62% Date Thu Jan 5 11:13:21 GMT 2012 Rank 22 Aligned Residues 175 % Identity 18% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.																							.	.	.	.
Query SS confidence																																							.																							.	.	.	.
Query Sequence		N	R	A	R	F	A	A	R	K	Q	L	V	L	N	L	V	S	S	P	G	S	G	K	T	T	L	L	T	E	T	L	M	R	L	K	D	S	.	V	P	C	A	V	I	E	G	D	Q	Q	T	V	N	D	A	A	R	I	R	A	T	.	.	.	.	G	T	P	A	I	Q	V	N	T	G	K	G	C	H	L	D
Query Conservation																																							.																							.	.	.	.
Alig confidence																																							.																							.	.	.	.													.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		I	E	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	.	.	.	P
Template Known Secondary structure							T	S		S										T	T	S	S															T	T										T	T															T	T							S	T	T			.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.										.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		A	Q	M	I	A	D	A	A	P	R	L	P	L	D	D	N	G	I	L	F	I	E	N	V	G	N	L	V	C	P	A	S	F	.	.	.	.	.	.	.	.	.	D	L	G	E	K	H	K	V	A	V	L	S	V	T	E	G	E	D	K	P	L	K	Y	P	H	M	F	A	.	.	A	A	S	L	M	L	L	N
Query Conservation																																			.	.	.	.	.	.	.	.	.																													.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		A	A	V	A	Y	D	A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A	L	A	G	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	G	I	I	L	T
Template Known Secondary structure																T		S								S	S			S	S	S																S								T	T		T	T	T												S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	D	L	L	P	Y	L	N	F	D	V	E	K	C	I	A	C	A	R	E	V	N	P	E	I	E	I	I	L	I	S	A	T	S	G	E	G	M	D	Q	W
Query Conservation
Alig confidence																				.	.	.	.	.	.									.	.
Template Conservation																				.	.	.	.	.	.									.	.
Template Sequence		K	L	D	A	D	A	R	G	G	A	A	L	S	I	S	Y	V	I	.	.	.	.	.	.	D	A	P	I	L	F	V	G	.	.	V	G	Q	G	Y	D	D	L
Template Known Secondary structure		S	G	G	G		S	S												.	.	.	.	.	.	T								.	.		S	S	S	G	G	G
Template Predicted Secondary structure																				.	.	.	.	.	.									.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.							.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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