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Job DescriptionP0AAN3
Confidence98.85%DateThu Jan 5 11:13:21 GMT 2012
Rank230Aligned Residues146
% Identity17%Templatec3cpjB_
PDB info PDB header:protein transportChain: B: PDB Molecule:gtp-binding protein ypt31/ypt8; PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   104.....110.........120.........130.........140.........150.........160.........170.........180...
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Query Sequence  QLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLPLD
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Template Sequence  LFKIVLIGDSGVGKSNLLSRFTKNEFNMGVEFATRTLEIEGKR. . . . . . . . IKAQIWDTAGQERY. . . . . . . . . . . . . . .
Template Known Secondary structure  S
TTSS






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   13......20.........30.........40.........50..... ....60.........
 
   184.....190.........200.........210.........220. ........230.........240.........250........
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Query Sequence  DNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDK. . . . . PLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAR
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Template Sequence  . . . . . . . . . . . . RAITSAYYRGAVGALIVYDSKSSSYENCNHWLSELRENADVAVGLIGNKSDLAHLRAVPTEESKTFAQ
Template Known Secondary structure  ............T


GGGTTT









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   76...80.........90.........100.........110.........120.........130.........140...
 
   259260.........270.........280.......
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Query Sequence  EVNPEIEIILISATSGEGMDQWLNWLETQ
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Template Sequence  ENQ. . LLFTETSAL. SENVDKAFEELINT
Template Known Secondary structure  TT..




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   147.. 150........ .160.........170..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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