Job Description P0AAN3 Confidence 99.23% Date Thu Jan 5 11:13:21 GMT 2012 Rank 94 Aligned Residues 167 % Identity 18% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.			.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																.												.	.					.	.
Query SS confidence																																.												.	.					.	.
Query Sequence		R	K	Q	L	V	L	N	L	V	S	S	P	G	S	G	K	T	T	L	L	T	E	T	L	M	R	L	K	D	S	.	V	P	C	A	V	I	E	G	D	Q	Q	.	.	T	V	N	D	.	.	A	A	R	I	R	A	T	G	T	P	A	I	Q	V	N	T	G	K	G	C	H	L	D	A	Q	M	I	A	D	A
Query Conservation																																.												.	.					.	.
Alig confidence																																.												.	.					.	.																				.	.
Template Conservation																																																																							.	.
Template Sequence		K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	.	.	S	P	V	D	I	V	K	E	G
Template Known Secondary structure		S	S										S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S	S							S	S	S			.	.	S	S	S	T	T
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.										.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																			.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.																			.	.	.
Query Sequence		A	P	R	L	P	L	D	D	N	G	I	L	F	I	E	N	V	G	N	L	V	C	P	A	S	F	.	.	.	.	.	.	.	.	.	D	L	G	E	K	H	K	V	A	V	L	S	V	T	E	G	E	D	.	.	.	K	P	L	K	Y	P	H	M	F	A	A	A	S	L	M	L	L	N	K	V	D	L	L	P
Query Conservation																												.	.	.	.	.	.	.	.	.																			.	.	.
Alig confidence							.	.																				.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation							.	.
Template Sequence		M	E	K	F	K	.	.	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A	K	A	F	K	E	A	V	G	E	I	G	S	I	I	V	T	K	L	D	G	S	A
Template Known Secondary structure				T	T	S	.	.	S		S									S		S	S											T	T	S	S	S			S								G	G	G	G	G	G										T	T	S		S									S	S	S		S
Template Predicted Secondary structure							.	.
Template SS confidence
		176	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	N	F	D	V	E	K	C	I	A	C	A	R	E	V	N	P	E	I	E	I	I	L	I	S	A	T	S	G	E	G	M	D	Q	W
Query Conservation
Alig confidence														.	.	.	.	.	.										.	.
Template Conservation														.	.	.	.	.	.										.	.
Template Sequence		K	G	G	G	A	L	S	A	V	A	E	T	.	.	.	.	.	.	K	A	P	I	K	F	I	G	I	.	.	G	E	G	I	D	D	L
Template Known Secondary structure		T	T										S	.	.	.	.	.	.	S									.	.	S	S	S	S	S	S
Template Predicted Secondary structure														.	.	.	.	.	.										.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.							.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions