Job Description P0AAN3 Confidence 99.16% Date Thu Jan 5 11:13:21 GMT 2012 Rank 120 Aligned Residues 171 % Identity 18% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																	.	.																							.	.	.	.
Query SS confidence																																	.	.																							.	.	.	.
Query Sequence		F	A	A	R	K	Q	L	V	L	N	L	V	S	S	P	G	S	G	K	T	T	L	L	T	E	T	L	M	R	L	K	.	.	D	S	V	P	C	A	V	I	E	G	D	Q	Q	T	V	N	D	A	A	R	I	R	.	.	.	.	A	T	G	T	P	A	I	Q	V	N	T	G	K	G	C	H	L	D	A	Q	M
Query Conservation																																	.	.																							.	.	.	.
Alig confidence																																	.	.																							.	.	.	.															.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	.	.	.	P	V	D	I
Template Known Secondary structure		S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T							S	S				.	.	.	T	T
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.										.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		I	A	D	A	A	P	R	L	P	L	D	D	N	G	I	L	F	I	E	N	V	G	N	L	V	C	P	A	S	F	.	.	.	.	.	.	.	.	.	D	L	G	E	K	H	K	V	A	V	L	S	V	T	E	G	E	D	K	P	L	K	Y	P	H	M	F	A	.	.	A	A	S	L	M	L	L	N	K	V	D
Query Conservation																																.	.	.	.	.	.	.	.	.																													.	.
Alig confidence																																.	.	.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K	V	D
Template Known Secondary structure												T	T		S											S	S																		S								T	T	T	G	G	G	G									T	T		S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	P	Y	L	N	F	D	V	E	K	C	I	A	C	A	R	E	V	N	P	E	I	E	I	I	L	I	S	A	T	S	G	E	G	M	D	Q	W
Query Conservation
Alig confidence																	.	.	.	.	.	.								.	.
Template Conservation																	.	.	.	.	.	.								.	.
Template Sequence		G	D	A	R	G	G	A	A	L	S	I	R	H	I	T	.	.	.	.	.	.	G	K	P	I	K	F	L	.	.	G	V	G	E	K	T	E	A	L
Template Known Secondary structure		S		S			T								T	T	.	.	.	.	.	.	T			B				.	.			S	S	S	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.								.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.							.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions