Job Description P0AAN3 Confidence 99.36% Date Thu Jan 5 11:13:21 GMT 2012 Rank 63 Aligned Residues 168 % Identity 17% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																.																							.	.	.	.
Query SS confidence																																.																							.	.	.	.
Query Sequence		R	K	Q	L	V	L	N	L	V	S	S	P	G	S	G	K	T	T	L	L	T	E	T	L	M	R	L	K	D	S	.	V	P	C	A	V	I	E	G	D	Q	Q	T	V	N	D	A	A	R	I	R	A	T	.	.	.	.	G	T	P	A	I	Q	V	N	T	G	K	G	C	H	L	D	A	Q	M	I	A	D	A
Query Conservation																																.																							.	.	.	.
Alig confidence																																.																							.	.	.	.													.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	.	.	.	P	E	S	I	R	R	R	V
Template Known Secondary structure			S	S									T	T	S	S															T	T										S	S																T								T	T			.	.	.
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.										.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		A	P	R	L	P	L	D	D	N	G	I	L	F	I	E	N	V	G	N	L	V	C	P	A	S	F	.	.	.	.	.	.	.	.	.	D	L	G	E	K	H	K	V	A	V	L	S	V	T	E	G	E	D	K	P	L	K	Y	P	H	M	F	A	.	.	A	A	S	L	M	L	L	N	K	V	D	L	L	P	Y
Query Conservation																												.	.	.	.	.	.	.	.	.																													.	.
Alig confidence																												.	.	.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V	L	T	K	L	D	G	D	A	R
Template Known Secondary structure									T		S										S	S																			S								S	S	S		S													S										S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	F	D	V	E	K	C	I	A	C	A	R	E	V	N	P	E	I	E	I	I	L	I	S	A	T	S	G	E	G	M	D	Q	W
Query Conservation
Alig confidence													.	.	.	.	.	.										.	.
Template Conservation													.	.	.	.	.	.										.	.
Template Sequence		G	G	A	A	L	S	A	R	H	V	T	.	.	.	.	.	.	G	K	P	I	Y	F	A	G	V	.	.	S	E	K	P	E	G	L
Template Known Secondary structure												S	.	.	.	.	.	.							B			.	.		S	S	G	G	G
Template Predicted Secondary structure													.	.	.	.	.	.										.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.							.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions