 |
Job Description | P0AAN3 | Confidence | 98.28% | Date | Thu Jan 5 11:13:21 GMT 2012 |
Rank | 279 | Aligned Residues | 92 |
% Identity | 14% | Template | c2gzaB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:type iv secretion system protein virb11; |
PDBTitle: crystal structure of the virb11 atpase from the brucella suis type iv2 secretion system in complex with sulphate
|
Resolution | 2.60 Å |
|
 |
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | D | K | N | N | R | L | A | E | R | N | R | A | R | F | A | A | R | K | Q | L | V | L | N | L | V | S | S | P | G | S | G | K | T | T | L | L | T | E | T | L | M | R | L | K | D | S | V | P | C | A | V | I | E | G | D | Q | Q | T | V | N | D | A | A | R | I | R | A | T | G | T | P | A | I | Q | V | N | T | G | K |
Query Conservation |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |   |   |   |
|
|
|
|   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
| . | . |
|   |
|   |
|
|
|
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |   |   |
|
|
|
|
|
|
|   |   |
|
|   |
| . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
L | K | E | A | G | D | Y | M | S | F | L | R | R | A | V | Q | L | E | R | V | I | V | . |
. |
V | A | G | E | T | G | S | G | K | T | T | L | M | K | A | L | M | Q | E | I | P | F | D | Q | R | L | I | T | I | E | D | V | P | E | L | F | L | . |
. |
. |
. |
. |
. |
P | D | H | P | N | H | V | H | L | F | Y | P | P |
Template Known Secondary structure |   |
 |  |  |  | T |
|  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  | . | . |  |  |  | S | T | T | S | S |  |  |  |  |  |  |  |  |  | T | T | S |
| T | T | S |
|  |  |  |  |  | S | S | S |
|
|
|
| . | . | . | . | . | . | T | T |
| S | S |  |  |  |  |  |
|
|
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |
| . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
158 | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | |
|
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 220 | . | . | . | . | . | . | . | . | . |
  |
  |   |
165 | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | C | H | L | D | A | Q | M | I | A | D | A | A | P | R | L | P | L | D | D | N | G | I | L | F | I |
Query Conservation |   |
  |
|   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |
|   |
|
Alig confidence |   |
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  | . | . | . | . | . | . |   |   |   |   |   |
|   |   |   |
|
|   |   |
|
|   |
|
|
|
Template Sequence |   |
V | . |
. |
. |
. |
. |
. |
T | A | A | T | L | L | R | S | C | L | R | M | K | P | T | R | I | L | L |
Template Known Secondary structure |   |
| . | . | . | . | . | . |
|  |  |  |  |  |  |  |  | T | T | S |
|
| S |  |  |  |  |
Template Predicted Secondary structure |   |
| . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
239 | |
|
|
|
|
|
240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|