Job Description P0AAN3 Confidence 99.18% Date Thu Jan 5 11:13:21 GMT 2012 Rank 110 Aligned Residues 162 % Identity 19% Template c1mj1A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:elongation factor tu; PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome Resolution 13.00 Å

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		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.													.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	K	Q	L	V	L	N	L	V	S	S	P	G	S	G	K	T	T	L	L	T	E	T	L	M	R	L	K	D	S	.	V	P	C	A	V	I	E	G	D	Q	Q	T	V	N	D	A	A	R	I	R	.	.	.	.	.	.	.	.	.	.	.	.	A	T	G	T	P	A	I	Q	V	N	T	G	K	G	C	H
Query Conservation																																	.																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	R	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	L	T	Y	V	A	A	A	E	N	R	N	V	E	V	K	D	Y	G	D	I	D	K	A	R	E	E	R	A	R	G	I	T	I	N	T	A	H	V	E	Y	E	T	A	K	R	H	Y	S	H	V	D	C	R	G	H	A	D
Template Known Secondary structure			S										S	T	T	S	S																S	T	T										S		S						T	T	S			S									S	S											S	G	G
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																									.	.	.	.											.
Query SS confidence																																																									.	.	.	.											.
Query Sequence		L	D	A	Q	M	I	A	D	A	A	P	R	L	P	L	D	D	N	G	I	L	F	I	E	N	V	G	N	L	V	C	P	A	S	F	D	L	G	E	K	H	K	V	A	V	L	S	V	T	E	G	E	D	K	P	.	.	.	.	L	K	Y	P	H	M	F	A	A	A	.	S	L	M	L	L	N	K	V	D	L
Query Conservation																																																									.	.	.	.											.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.											.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	I	K	N	M	I	T	G	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	D	G	A	I	L	V	V	S	A	A	D	G	R	M	R	Q	T	R	E	H	I	L	L	A	R	Q	V	G	V	R	Y	I	V	V	F	M	N	K	V	D	M
Template Known Secondary structure		G									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S	S							T	T	T		S														T	T											G	G	G
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.																												.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260								.	.	.	.	.	.	.	.	.	270	.												.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																				.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	Y	L	N	F	D	V	E	K	C	I	A	C	A	R	E	V	.	.	.	.	.	.	.	N	P	E	I	E	I	I	L	I	S	A	.	.	.	.	.	.	.	.	.	.	.	T	S	G	E	G	M	D	Q	W	L	N	W	L	E	T	Q	R	C	A
Query Conservation																				.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		V	D	.	D	R	E	L	L	D	L	V	E	M	E	V	R	D	L	L	N	Q	Y	E	F	R	G	D	E	V	R	V	I	R	G	S	A	L	L	A	L	E	E	M	H	K	N	R	K	T	K	R	G	E	N	E	W	V	D	K	I	W	E	L	L	D	A
Template Known Secondary structure				.																			T	T	S		T	T	T	S																		T	T			T	T	T
Template Predicted Secondary structure				.
Template SS confidence
		141	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions