Job Description P0AAN3 Confidence 99.30% Date Thu Jan 5 11:13:21 GMT 2012 Rank 81 Aligned Residues 157 % Identity 18% Template c1d2eA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:elongation factor tu (ef-tu); PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp Resolution 1.94 Å

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		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.											.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		R	K	Q	L	V	L	N	L	V	S	S	P	G	S	G	K	T	T	L	L	T	E	T	L	M	R	L	K	D	S	V	P	C	A	.	.	.	.	.	.	.	.	.	.	V	I	E	G	D	Q	Q	T	V	N	D	.	.	A	A	R	I	R	A	T	G	T	P	A	I	Q	V	N	T	G	K	G	C	H	L	D
Query Conservation																																				.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.												.	.																			.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	K	I	L	A	E	G	G	G	A	K	F	K	K	Y	E	E	I	D	N	A	P	E	E	R	A	R	G	I	T	I	N	A	A	H	V	E	Y	S	T	A	A	R	H	Y	A	H	T	D	C	P	G	.	.	.	.	H
Template Known Secondary structure											S	S	T	T	S	S															T	T	S	B										S							T	T													S	S									S	S	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.										.
Query SS confidence																																																							.	.	.	.										.
Query Sequence		A	Q	M	I	A	D	A	A	P	R	L	P	L	D	D	N	G	I	L	F	I	E	N	V	G	N	L	V	C	P	A	S	F	D	L	G	E	K	H	K	V	A	V	L	S	V	T	E	G	E	D	K	P	.	.	.	.	L	K	Y	P	H	M	F	A	A	.	A	S	L	M	L	L	N	K	V	D	L	L	P
Query Conservation																																																							.	.	.	.										.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.										.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	Y	V	K	N	M	I	T	G	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	D	G	C	I	L	V	V	A	A	N	D	G	P	M	P	Q	T	R	E	H	L	L	L	A	R	Q	I	G	V	E	H	V	V	V	Y	V	N	K	A	D	A	V	Q
Template Known Secondary structure											T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S								T	T	T		S														T	T											G	G	G		S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.																								.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260								.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.											.	.	280	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	N	F	D	V	E	K	C	I	A	C	A	R	E	V	.	.	.	.	.	.	.	N	P	E	I	E	I	I	L	I	S	A	T	S	G	E	G	M	.	.	.	.	.	.	.	.	.	.	D	Q	W	L	N	W	L	E	T
Query Conservation																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence					.													.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		D	S	E	.	M	V	E	L	V	E	L	E	I	R	E	L	L	T	E	F	G	Y	K	G	E	E	T	P	I	I	V	G	S	A	L	C	A	L	E	Q	R	D	P	E	L	G	L	K	S	V	Q	K	L	L	D	A	V	D	T
Template Known Secondary structure					.																T	T	S		T	T	T	S												T	T			T	T	T	T
Template Predicted Secondary structure					.
Template SS confidence
		188	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions