Job Description P69910 Confidence 99.97% Date Thu Jan 5 12:12:18 GMT 2012 Rank 34 Aligned Residues 341 % Identity 15% Template d2c0ra1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.2

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																							.	.	.										.	.	.	.
Query SS confidence																							.	.	.										.	.	.	.
Query Sequence		L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	.	.	.	N	K	N	W	I	D	K	E	E	.	.	.	.	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L
Query Conservation																							.	.	.										.	.	.	.
Alig confidence																							.	.	.										.	.	.	.																									.	.	.
Template Conservation																																																															.	.	.
Template Sequence		N	F	N	A	G	P	A	A	L	P	L	E	V	L	E	R	A	Q	A	E	F	V	D	Y	Q	H	T	G	M	S	I	M	E	M	S	H	R	G	A	V	Y	E	A	V	H	N	E	A	Q	A	R	L	L	A	L	L	G	N	P	T	G	.	.	.	Y	K	V	L	F	I	Q	G	G	A	S	T	Q	F	A	M
Template Known Secondary structure					S	S	S														T	S	S	S	S	T	T	S	S	S		G	G	G	S		T	T	S																		T	T			S	S	.	.	.							S	S
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.																																	.
Query SS confidence																																			.	.																																	.
Query Sequence		G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	.	.	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	.	C	D	E	N	T	I	G	V	V	P	T	F
Query Conservation																																			.	.																																	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																	.	.																				.													.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Sequence		I	P	M	N	F	.	.	.	.	.	.	.	.	.	.	.	.	L	K	E	G	Q	T	A	N	Y	V	M	T	G	S	W	A	S	K	A	L	K	E	A	K	L	I	G	D	T	H	V	A	A	S	S	E	A	.	S	N	Y	M	T	L	P	K	L	Q	E	I	Q	L	Q	D	N	A	A	Y	L	H	L	T	S
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.			T	T									S														S									G	G	.	G	T	T		S				G	G	G					T	T								S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template SS confidence
		84	.	.	.	.													.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W
Query Conservation
Alig confidence												.	.	.	.	.								.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																		.
Template Conservation												.	.	.	.	.								.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																		.
Template Sequence		N	E	T	I	E	G	A	Q	F	K	.	.	.	.	.	A	F	P	D	T	G	S	.	.	.	.	.	.	V	P	L	I	G	D	M	S	S	D	I	L	S	R	P	F	.	.	.	.	.	.	.	.	.	D	L	N	Q	F	G	L	V	Y	A	G	A	Q	K	N	L	G	.	P	S	G	V	T	V	V	I	V
Template Known Secondary structure				T	T	T	T				S	.	.	.	.	.	S					T	T	.	.	.	.	.	.	S							T	T	T	T	T	S	S			.	.	.	.	.	.	.	.	.		G	G	G		S						T	T	T	T	T		.		S	S
Template Predicted Secondary structure												.	.	.	.	.								.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.										.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																						.	.																														.
Query SS confidence																						.	.																														.
Query Sequence		R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	.	.	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	.	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I
Query Conservation																						.	.																														.
Alig confidence			.																			.	.																														.
Template Conservation			.
Template Sequence		R	.	E	D	L	V	A	E	S	P	K	H	L	P	T	M	L	R	Y	D	T	Y	V	K	N	N	S	L	Y	N	T	P	P	S	F	G	I	Y	M	V	N	E	V	L	K	W	I	E	E	R	G	G	L	E	G	V	Q	Q	A	N	R	K	K	A	S	L	I	Y	D	A	I	D	Q	S	G	G	F	Y	R	G
Template Known Secondary structure			.	G	G	G	S	S	S			T	T	S		G	G	G								T	T	T		S	S																				T	T																						T	S	T	T	S	S
Template Predicted Secondary structure			.
Template SS confidence
		210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K
Query Conservation
Alig confidence																			.	.	.	.																													.	.	.	.	.
Template Conservation																			.	.	.	.																													.	.	.	.	.
Template Sequence		C	V	D	V	D	S	R	S	D	M	N	I	T	F	R	L	A	.	.	.	.	S	E	E	L	E	K	E	F	V	K	A	S	E	Q	E	G	F	V	G	L	K	G	H	R	S	V	G	G	.	.	.	.	.	L	R	A	S	I	Y	N	A	V	P	Y	E	S	C	E	A	L	V	Q	F	M	E	H	F	K	R
Template Known Secondary structure		S	S		G	G	G	B		S	S							S	.	.	.	.															T	T			S		B			T	T	T		S	.	.	.	.	.							T	T	S
Template Predicted Secondary structure																			.	.	.	.																													.	.	.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.					.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.						.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		447
Predicted Secondary structure
Query SS confidence
Query Sequence		Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions