Job Description P69910 Confidence 99.95% Date Thu Jan 5 12:12:18 GMT 2012 Rank 50 Aligned Residues 346 % Identity 11% Template d1mdoa_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.70

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K
Query Conservation
Alig confidence																															.	.									.	.	.	.												.	.	.	.	.	.	.																			.
Template Conservation																															.	.									.	.	.	.												.	.	.	.	.	.	.																			.
Template Sequence		D	F	L	P	F	S	R	P	A	X	G	A	E	E	L	A	A	V	K	T	V	L	D	S	G	W	I	T	T	.	.	G	P	K	N	Q	E	L	E	.	.	.	.	A	A	F	C	R	L	T	G	N	Q	Y	.	.	.	.	.	.	.	A	V	A	V	S	S	A	T	A	G	X	H	I	A	L	X	A	L	.
Template Known Secondary structure				B		S																				T			S	S	.	.	S								.	.	.	.										S		.	.	.	.	.	.	.					S													T	.
Template Predicted Secondary structure																															.	.									.	.	.	.												.	.	.	.	.	.	.																			.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.								.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																							.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																							.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	G	I	G	E	G	D	E	V	I	T	P	S	X	T	W	V	S	T	L	N	X	I	V	L	L	G	A	N	P	V	X	V	D	V	D	R	D	T	L	X	V	T	P	E	H	I	E	A	A	I	T	P	Q	T	.	.	.	K	A	I	I	P	V	H	Y	A	G	A	P	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	T			T	T							S	S	S											T	T								B		T	T	T			B											T	T		.	.	.						B		G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																							.	.	.
Template SS confidence
												75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E
Query Conservation
Alig confidence															.	.	.	.	.	.																					.	.	.	.	.																		.
Template Conservation															.	.	.	.	.	.																					.	.	.	.	.																		.
Template Sequence		D	L	D	A	I	Y	A	L	G	E	R	Y	G	.	.	.	.	.	.	I	P	V	I	E	D	A	A	H	A	T	G	T	S	Y	K	G	R	H	I	.	.	.	.	.	G	A	R	G	T	A	I	F	S	F	H	A	I	K	N	I	T	.	C	A	E	G	G	I	V	V	T	D	N	P	Q	F	A	D	K	L
Template Known Secondary structure														T	.	.	.	.	.	.			B					T	T		T	T				T	T			T	.	.	.	.	.	T	S	S	S								T	T	S	S	S		.	S	S	S							S
Template Predicted Secondary structure															.	.	.	.	.	.																					.	.	.	.	.																		.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.							.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V
Query Conservation
Alig confidence																																						.	.
Template Conservation																																						.	.
Template Sequence		R	S	L	K	F	H	G	L	G	V	D	Q	A	E	V	L	A	P	G	Y	K	Y	N	L	P	D	L	N	A	A	I	A	L	A	Q	L	.	.	Q	K	L	D	A	L	N	A	R	R	A	A	I	A	A	Q	Y	H	Q	A	X	A	D	L	P	F	Q	P	L	S	L	P	S	W	E	H	I	H	A	W	H	L
Template Known Secondary structure					T	B	T	T									S	S				B																.	.		T																					T	S	S								S	S							S
Template Predicted Secondary structure																																						.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.																			.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	I	I	R	V	D	E	A	R	C	G	I	T	R	D	A	L	X	A	S	L	K	T	K	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	T	L	P	D	T	E	W	N	S	E	R	I	C	S	L	P	L	F	P	D	X	T	E	S	D	F	D	R	V	I	T	A
Template Known Secondary structure												S	S												T	T	B			B						G	G	G	S							S	T	T											T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		441	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	A	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	Q	I	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions