Phyre 2 alignment of P69910 with d1m6sa

Job Description P69910
Confidence 99.88% Date Thu Jan 5 12:12:18 GMT 2012

Rank 91 Aligned Residues 328

% Identity 15% Template d1m6sa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K
Query Conservation
Alig confidence																						.																				.	.	.	.										.	.	.	.	.	.	.
Template Conservation																						.																				.	.	.	.										.	.	.	.	.	.	.
Template Sequence	D	L	R	S	D	T	V	T	K	P	T	E	E	M	R	K	A	M	A	Q	A	.	E	V	G	D	D	V	Y	G	E	D	P	T	I	N	E	L	E	R	L	.	.	.	.	A	A	E	T	F	G	K	E	A	.	.	.	.	.	.	.	A	L	F	V	P	S	G	T	M	G	N	Q	V	S	I	M	A	H	T
Template Known Secondary structure			S		G	G	G													T		.					G	G	G	T												.	.	.	.					T	T		S		.	.	.	.	.	.	.					S
Template Predicted Secondary structure																						.																				.	.	.	.										.	.	.	.	.	.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.								.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70

	139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																						.																											.	.	.	.	.	.	.
Query SS confidence																																						.																											.	.	.	.	.	.	.
Query Sequence	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	.	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	.	.	.	.	.	.	.	T	I	G	V	V	P	T	F	G
Query Conservation																																						.																											.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.																								.																											.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	G	D	E	V	I	L	E	A	D	S	H	I	F	W	Y	E	V	G	A	M	A	V	L	S	G	V	M	P	H	P	V	P	G	K	N	G	A	M	D	P	D	D	V	R	K	A	I	R	P	R	N	I	H	F	P	R	T	S	L	I	A	I	E	N	T	H
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.	.	T							T	T						S	S	T	T						T											T	T											S			S		T	T	S										S	S	B
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	71	.													.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

	211	.	.	.	.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	.	.	.	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V
Query Conservation															.	.	.
Alig confidence															.	.	.								.	.	.	.	.	.														.	.
Template Conservation																									.	.	.	.	.	.														.	.
Template Sequence	N	R	S	G	G	R	V	V	P	L	E	N	I	K	E	I	C	T	I	A	K	E	H	G	.	.	.	.	.	.	I	N	V	H	I	D	G	A	R	I	F	N	A	.	.	S	I	A	S	G	V	P	V	K	E	Y	A	G	Y	A	D	S	V	M	F	C	L	S	G	L	C	A	P	V	G	S	V	V	V	G
Template Known Secondary structure	T	T	T	T	S	B																		T	.	.	.	.	.	.								T	T					.	.														T		S												S	S
Template Predicted Secondary structure																									.	.	.	.	.	.														.	.
Template SS confidence
	139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

	288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	R	D	F	I	E	R	A	R	K	A	R	K	M	L	G	G	G	M	R	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	L	A	A	A	G	I	I	A	L	T	K	M	V	D	R	L	K	E	D	H	E	N	A	R	F	L	A	L	K	L	K	E	I	G	Y	S	V	N	P	E
Template Known Secondary structure																T				S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S	S	T	T																			T		B			G	G
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

	368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y
Query Conservation
Alig confidence	.	.	.	.														.	.	.																								.	.	.	.	.	.	.
Template Conservation	.	.	.	.														.	.	.																								.	.	.	.	.	.	.
Template Sequence	.	.	.	.	D	V	K	T	N	M	V	I	L	R	T	D	N	.	.	.	L	K	V	N	A	H	G	F	I	E	A	L	R	N	S	G	V	L	A	N	A	V	S	.	.	.	.	.	.	.	D	T	E	I	R	L	V	T	H	K	D	V	S	R	N	D	I	E	E	A	L	N	I	F	E	K	L	F	R	K
Template Known Secondary structure	.	.	.	.	G			S	S							T	T	.	.	.	S	S	S													T								.	.	.	.	.	.	.	T	T								T	T	S
Template Predicted Secondary structure	.	.	.	.														.	.	.																								.	.	.	.	.	.	.
Template SS confidence
					276	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.								.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

	448
Predicted Secondary structure
Query SS confidence
Query Sequence	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	342

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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