Phyre 2 alignment of P69910 with c3ruyB

Job Description P69910
Confidence 99.82% Date Thu Jan 5 12:12:18 GMT 2012

Rank 137 Aligned Residues 344

% Identity 15% Template c3ruyB_

PDB info PDB header:transferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis

Resolution 2.65 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	51	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence	Y	L	D	G	N	A	R	Q	N	L	A	T	.	.	.	.	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.																														.	.																				.	.	.	.	.	.	.
Template Conservation																																														.	.																				.	.	.	.	.	.	.
Template Sequence	D	P	E	G	N	R	Y	M	D	L	L	S	A	Y	S	A	V	N	Q	G	H	R	H	P	K	I	I	N	A	L	I	D	Q	A	N	R	V	T	L	T	S	R	A	F	H	.	.	S	D	Q	L	G	P	W	Y	E	K	V	A	K	L	T	N	K	E	M	.	.	.	.	.	.	.	V	L	P	M	N	T	G
Template Known Secondary structure		T	T							S	S					T		T	T		B	T												T	T	T		S				T	T	S		.	.		S	S													T		S		.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure																																														.	.																				.	.	.	.	.	.	.
Template SS confidence
	36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.

	127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.																											.	.	.	.	.	.
Query SS confidence																																				.																											.	.	.	.	.	.
Query Sequence	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	.	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	.	.	.	.	.	.	F	M	D	P	K	R	M	I	E	A	C	D
Query Conservation																																				.																											.	.	.	.	.	.
Alig confidence																			.	.																.																											.	.	.	.	.	.
Template Conservation																			.	.
Template Sequence	A	E	A	V	E	T	A	I	K	T	A	R	R	W	A	Y	D	V	.	.	K	K	V	E	A	N	R	A	E	I	I	V	C	E	D	N	F	H	G	R	T	M	G	A	V	S	M	S	S	N	E	E	Y	K	R	G	F	G	P	M	L	P	G	I	I	V	I	P	Y	G	D	L	E	A	L	K	A	A	I	T
Template Known Secondary structure																		T	.	.	S				T	T								T	T					S	S					T	T		S		T	T	T	T	T	T			S			S	S						T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.													.	.	.	.	.	.												.	.	.	.
Template Conservation																																					.	.	.	.	.	.												.	.	.	.
Template Sequence	P	N	T	A	A	F	I	L	E	P	I	Q	G	E	A	G	I	N	I	P	P	A	G	F	L	K	E	A	L	E	V	C	K	K	E	N	.	.	.	.	.	.	V	L	F	V	A	D	E	I	Q	T	G	.	.	.	.	L	G	R	T	G	K	V	F	A	C	D	W	D	N	V	T	P	D	M	Y	I	L	G
Template Known Secondary structure	T	T								S	S	B	T	T	T	T	S	B				T	T												T	T	.	.	.	.	.	.								T	T	T	T	.	.	.	.	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S
Template Predicted Secondary structure																																					.	.	.	.	.	.												.	.	.	.
Template SS confidence
	185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220							.	.	.	.	.	.	.	.	.	230	.					.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	L	G	G	G	V	F	P	I	S	C	A	A	A	N	R	D	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	F	E	P	G	S	H	G	S	T	F	G	G	N	P	L	A	C	A	V	S	I	A	A	L	E	V	L	E	E	E	K	L	T	E	R	S	L	Q	L	G	E	K	L	V	G
Template Known Secondary structure		T	T	T	T	T	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T			T	T	S	S			S	S	T	T																		T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.															.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

	356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E
Query Conservation
Alig confidence							.								.	.														.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation							.								.	.														.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Sequence	Q	L	K	E	I	D	.	N	P	M	I	T	E	V	.	.	R	G	K	G	L	F	I	G	I	E	L	N	E	.	.	.	.	.	.	P	A	R	P	Y	C	E	Q	L	K	A	A	G	L	L	C	K	.	.	.	.	.	.	.	E	T	H	E	N	V	I	R	I	A	P	P	L	V	I	S	E	E	D	L	E
Template Known Secondary structure			T	T			.		T	T					.	.				T	T							S	S	.	.	.	.	.	.		S											T					.	.	.	.	.	.	.			T	T	T								T	T
Template Predicted Secondary structure							.								.	.														.	.	.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
	322	.	.	.	.	.		.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.							.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.								.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

	436	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	L	L	E	D	Y	K	A	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	W	A	F	Q	K	I	K	A	V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	386	.	.	.	390	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions