Phyre 2 alignment of P69910 with c3ndnC

Job Description P69910
Confidence 99.87% Date Thu Jan 5 12:12:18 GMT 2012

Rank 97 Aligned Residues 330

% Identity 14% Template c3ndnC_

PDB info PDB header:lyase Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase; PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate

Resolution 1.85 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G
Query Conservation
Alig confidence																																														.	.	.	.										.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.										.	.	.	.	.	.	.
Template Sequence	A	E	A	M	Y	L	T	S	G	Y	V	Y	G	S	A	A	V	A	E	K	S	F	A	G	E	L	D	H	Y	V	Y	S	R	Y	G	N	P	T	V	S	V	F	E	E	R	.	.	.	.	L	R	L	I	E	G	A	P	A	.	.	.	.	.	.	.	A	F	A	T	A	S	G	M	A	A	V	F	T	S	L
Template Known Secondary structure	S							S	B				S	S									T	T	S	S					B	T	T	T												.	.	.	.						T		S		.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure																																														.	.	.	.										.	.	.	.	.	.	.
Template SS confidence
	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.

	135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	.	.	.	.	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G
Query Conservation																																.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.																			.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Sequence	G	A	L	.	.	.	.	.	.	.	.	.	.	.	.	L	G	A	G	D	R	L	V	A	A	R	S	L	F	G	S	C	F	V	V	C	S	E	I	L	P	R	W	G	V	Q	T	V	F	V	D	G	D	.	.	.	.	.	.	D	L	S	Q	W	E	R	A	L	S	V	P	T	Q	A	V	F	F	E	T	P
Template Known Secondary structure		T	T	.	.	.	.	.	.	.	.	.	.	.	.			T	T							S	S											T					T	T								T	T	.	.	.	.	.	.									T	T	S			S						S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
	106	.	.													.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R
Query Conservation
Alig confidence																						.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Sequence	S	N	P	M	Q	S	L	V	D	I	A	A	V	T	E	L	A	H	A	A	G	.	.	.	.	.	.	A	K	V	V	L	D	N	V	F	A	T	P	L	L	Q	Q	G	.	.	.	.	.	.	.	.	F	P	L	G	V	D	V	V	V	Y	S	G	T	H	I	D	G	Q	G	R	V	L	G	G	A	I	L	G
Template Known Secondary structure		T	T	T																T	T	.	.	.	.	.	.								T	T	T								.	.	.	.	.	.	.	.	G	G	G	T		S										S		S	S
Template Predicted Secondary structure																						.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template SS confidence
	168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.							.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.									.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence	D	R	E	Y	I	D	G	P	V	Q	K	L	M	R	H	T	G	P	A	.	.	.	.	.	.	.	.	.	.	.	.	M	S	A	F	N	A	W	V	L	L	K	G	L	.	.	E	T	L	A	I	R	V	Q	H	S	N	A	S	A	Q	R	I	A	E	F	L	N	G	H	P	S	V	R	W	V	R	Y	P	Y
Template Known Secondary structure							T													.	.	.	.	.	.	.	.	.	.	.	.														.	.																							T		T	T							T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.													.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	371	.	.	.	.	.														.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.									.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.														.																			.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.														.																			.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	D	E	G	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	C	F	K	L	K	D	G	E	D	P	G	.	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	.	.	.	.	.	.	.	.	A	F	T	L	G	G	E	A	T	D	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.														.																			.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.														.																			.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	P	S	H	P	Q	Y	D	L	A	K	R	Q	M	S	G	G	G	T	V	V	T	F	A	L	D	C	P	E	D	V	A	K	Q	R	A	F	E	V	L	D	K	M	R	L	I	D	I	S	N	N	L	G	D	A	K	S	L	V	T	H	P	A	T	T	T	H	R	A	M	G	P	E	G	R	A	A	I	G	L
Template Known Secondary structure	S	T	T	S	T	T									S	S			S							S	S		G	G	G													S	S	S				S			S		S	S						G	G	G	T	T	T	S	T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
	301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y
Query Conservation	.
Alig confidence	.
Template Conservation
Template Sequence	G	D	G	V	V	R	I	S	V	G	L	E	D	T	D	D	L	I	A	D	I	D	R	A	L
Template Known Secondary structure		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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