Job Description P69910 Confidence 99.94% Date Thu Jan 5 12:12:18 GMT 2012 Rank 62 Aligned Residues 348 % Identity 16% Template c3n0lA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni Resolution 1.80 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.								.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		D	D	V	A	F	Q	I	I	N	D	E	L	Y	L	D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	.	.	.	.	.	.	.	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence																										.	.																							.	.	.	.	.	.	.																									.
Template Conservation																										.	.																																																						.
Template Sequence		D	K	E	I	F	D	L	T	N	K	E	L	E	R	Q	C	E	G	L	E	X	I	A	S	.	.	E	N	F	T	L	P	E	V	X	E	V	X	G	S	I	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	F	V	D	E	I	E	T	L	A	I	E	R	C	K	K	L	F	N	C	.
Template Known Secondary structure																			S					T	T	.	.													T	S	G	G	G	G							T	T			S	S	S																					T		.
Template Predicted Secondary structure																										.	.																																																						.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P
Query Conservation
Alig confidence		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.														.
Template Sequence		.	.	.	.	.	K	F	A	N	V	Q	P	N	S	G	S	Q	A	N	Q	G	V	Y	A	A	L	.	.	.	.	.	.	.	.	.	.	.	.	I	N	P	G	D	K	I	L	G	X	D	.	.	.	.	.	.	.	.	.	.	.	L	K	X	Y	E	S	C	F	Y	G	V	E	L	.	D	G	R	I	D	Y
Template Known Secondary structure		.	.	.	.	.	S							S	S													.	.	.	.	.	.	.	.	.	.	.	.	S		T	T								.	.	.	.	.	.	.	.	.	.	.				S									T	.	T	S	S
Template Predicted Secondary structure		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
							84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.													.	.	.	.	.	110	.	.	.	.	.												.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S
Query Conservation
Alig confidence																			.																							.	.	.	.	.	.																									.	.	.	.
Template Conservation																			.																							.	.	.	.	.	.																									.	.	.	.
Template Sequence		E	K	V	R	E	I	A	K	K	E	K	P	K	L	I	V	C	.	G	A	S	A	Y	A	R	V	I	D	F	A	K	F	R	E	I	A	D	E	I	G	.	.	.	.	.	.	A	Y	L	F	A	D	I	A	H	I	A	G	L	V	V	A	G	E	H	P	S	P	F	P	.	.	.	.	Y	A	H	V	V	S
Template Known Secondary structure														S					.			S	S			S															T	.	.	.	.	.	.								T	T	T						T	T	S	S				T	T	.	.	.	.	T		S
Template Predicted Secondary structure																			.																							.	.	.	.	.	.																									.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A
Query Conservation
Alig confidence														.																					.	.	.	.	.	.	.	.	.
Template Conservation														.																					.	.	.	.	.	.	.	.	.
Template Sequence		S	T	T	H	K	T	L	R	G	P	R	G	.	G	I	I	X	T	N	D	E	E	L	A	K	K	I	N	S	A	I	F	P	.	.	.	.	.	.	.	.	.	G	I	Q	G	G	P	L	X	H	V	I	A	A	K	A	V	G	F	K	F	N	L	S	D	E	W	K	V	Y	A	K	Q	V	R	T	N	A	Q
Template Known Secondary structure				S	S	T	T	T		S		S		.						S													T	T	.	.	.	.	.	.	.	.	.	T	T		S	S																	T	S
Template Predicted Secondary structure														.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.										.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.				.	.	420	.	.	.	.
Predicted Secondary structure																																																																				.	.	.								.	.	.	.
Query SS confidence																																																																				.	.	.								.	.	.	.
Query Sequence		Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	.	.	.	I	V	V	M	R	I	M	.	.	.	.
Query Conservation																																																																				.	.	.								.	.	.	.
Alig confidence												.											.	.	.										.	.	.																															.	.	.								.	.	.	.
Template Conservation												.											.	.	.										.	.	.
Template Sequence		V	L	A	N	V	L	X	D	R	K	.	F	K	L	V	S	D	G	T	D	N	.	.	.	H	L	V	L	X	S	F	L	D	.	.	.	R	E	F	S	G	K	D	A	D	L	A	L	G	N	A	G	I	T	A	N	K	N	T	V	P	G	E	I	R	S	P	F	I	T	S	G	L	R	L	G	T	P	A	L
Template Known Secondary structure										T	T	.				G	G	G	S		S	S	.	.	.	S							T	T	.	.	.	S	S	S												T	T									T	T			S		T	T	T		S
Template Predicted Secondary structure												.											.	.	.										.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	R	G	F	K	E	K	E	X	E	I	V	S	N	Y	I	A	D	I	L	D
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions