Job Description P69910 Confidence 99.51% Date Thu Jan 5 12:12:18 GMT 2012 Rank 223 Aligned Residues 332 % Identity 12% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K
Query Conservation
Alig confidence																																														.																									.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.																									.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	E	A	I	I	S	S	D	L	S	K	Y	N	K	E	Y	P	P	V	A	G	F	P	L	F	L	E	A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	.	G	R	I	A	S	C	Q	S	L	S	G	T	G	S	L	H	I	G	F	E	F	L	H	L	.	.	.	.	.	.	.	.	.	.	W
Template Known Secondary structure									S		T	T	T	S			S				T	T																T	T						T	.	T								S																.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120											.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.																		.	.	.																					.	.
Query SS confidence																																		.	.	.	.	.	.																		.	.	.																					.	.
Query Sequence		P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	.	.	.	.	.	.	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	.	.	.	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.
Query Conservation																																		.	.	.	.	.	.																		.	.	.																					.	.
Alig confidence																																		.	.	.	.	.	.																		.	.	.																					.	.
Template Conservation
Template Sequence		M	P	K	A	E	F	Y	M	P	S	T	T	W	P	N	H	Y	G	I	Y	D	K	V	F	N	K	L	K	V	P	Y	K	E	Y	T	Y	L	R	K	D	G	E	L	E	I	D	F	S	N	T	K	K	D	I	Q	S	A	P	E	K	S	I	F	L	F	H	A	C	A	H	N	P	S	G	I	D	F	T	E	A
Template Known Secondary structure			T	T							S	S			T												T	T	T	S								B		T	T	S		S	S	B												S		T	T							S	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure		.																																							.	.	.																				.																.	.	.
Query SS confidence		.																																							.	.	.																				.																.	.	.
Query Sequence		.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	.	.	.	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	.	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	.	.	.
Query Conservation		.																																							.	.	.																				.																.	.	.
Alig confidence		.													.	.	.	.	.	.																					.	.	.																				.																.	.	.
Template Conservation															.	.	.	.	.	.
Template Sequence		Q	W	K	E	L	L	P	I	M	K	E	K	K	.	.	.	.	.	.	H	I	A	F	F	D	S	A	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A	V	R	M	F	V	D	A	G	V	E	V	L	V	A	Q	S	F	S	K	N	F	G	L	Y	G	E	R	I	G	C	L	H	V	V	H	A	G	V
Template Known Secondary structure														T	.	.	.	.	.	.								S		T	T	T	S	S	S						T										T										T	T	T	S			G	G	G											S
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
												292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.									.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	.	.	.	.	.	.	.	.	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	S	V	E	K	N	K	A	L	S	A	A	M	V	S	G	M	T	L	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	R	K	T	W	S	M	S	A	I	H	G	A	Y	I	V	Q	V	I	V	H	D	K	R	L	L	Q	M	F	Y	D	N	V	K	E	M	S	A	R	I	H	R	M	R	S	L	L
Template Known Secondary structure		S	S	S																		.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	S	S														T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.													.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.			380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	.	.	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M
Query Conservation																												.	.
Alig confidence										.																		.	.				.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.						.
Template Conservation										.																							.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.						.
Template Sequence		H	A	S	L	A	K	R	K	.	T	P	G	P	G	S	K	G	T	W	D	H	I	L	T	A	I	G	M	F	T	F	.	.	.	.	.	T	G	L	T	P	E	H	V	D	Y	L	K	E	K	W	S	I	Y	L	V	K	A	G	G	.	.	.	.	.	.	.	.	.	.	R	M	S	M	C	.	G	L	T	E
Template Known Secondary structure								T	T	.				S	T	T	T	T			T							S	S				.	.	.	.	.																				B	T	G	G	G	.	.	.	.	.	.	.	.	.	.				G	G	.	G			T
Template Predicted Secondary structure										.																							.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.						.
Template SS confidence
		344	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.						.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.											.	.	400	.	.		.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	C	D	Y	V	A	E	A	I	H	D	A	V	T	K	L
Template Known Secondary structure		T	T															S
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions