Job Description P69910 Confidence 99.92% Date Thu Jan 5 12:12:18 GMT 2012 Rank 75 Aligned Residues 327 % Identity 13% Template c3ke3A_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase; PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution Resolution 2.20 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V
Query Conservation
Alig confidence											.																										.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																										.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	T	D	R	A	L	N	H	.	X	S	K	A	F	Q	E	V	X	N	D	L	L	S	N	L	K	T	V	Y	N	A	E	A	A	.	.	.	.	.	.	V	I	I	P	G	S	G	T	Y	G	X	E	A	V	A	R	Q	L	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	D	C	L	I
Template Known Secondary structure		S			T	T	S			T	.	T	S																			T		S			.	.	.	.	.	.					S															T	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure											.																										.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.														.	.	.	.	.	.
		159	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.
Predicted Secondary structure									.	.																				.	.	.	.	.	.	.	.	.	.															.																				.	.	.
Query SS confidence									.	.																				.	.	.	.	.	.	.	.	.	.															.																				.	.	.
Query Sequence		C	G	P	V	Q	I	C	.	.	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	.	.	.	.	.	.	.	.	.	.	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	.	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	.	.	.	E	F	P	Q	P
Query Conservation									.	.																				.	.	.	.	.	.	.	.	.	.															.																				.	.	.
Alig confidence									.	.																				.	.	.	.	.	.	.	.	.	.															.																				.	.	.
Template Conservation
Template Sequence		I	R	N	G	W	F	S	Y	R	W	T	Q	I	L	E	K	G	K	F	A	K	S	S	T	V	L	T	A	E	R	T	E	D	T	E	A	P	K	P	F	A	P	V	D	I	E	T	A	V	A	K	I	K	E	D	K	S	A	I	V	Y	A	P	H	V	E	T	S	S	G	I	I	L	S	E	E	Y	I	K	A
Template Known Secondary structure					S																S	S										S	S			S	S																				T		S						S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N
Query Conservation
Alig confidence											.	.	.	.	.	.															.	.	.	.	.	.	.	.																							.
Template Conservation											.	.	.	.	.	.															.	.	.	.	.	.	.	.																							.
Template Sequence		L	S	E	A	V	H	S	V	G	.	.	.	.	.	.	G	L	L	V	I	D	C	I	A	S	G	C	V	W	.	.	.	.	.	.	.	.	L	D	X	K	E	L	G	I	D	V	L	I	S	A	P	Q	G	W	S	S	T	P	.	C	A	G	L	V	X	L	S	A	A	A	I	K	K	V	E	S	T	E	S
Template Known Secondary structure									T	T	.	.	.	.	.	.								T	T		T	T			.	.	.	.	.	.	.	.							T		S											S			.																	T
Template Predicted Secondary structure											.	.	.	.	.	.															.	.	.	.	.	.	.	.																							.
Template SS confidence
		159	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.									.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		303	.	.	.	.	.												.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	Y	L	G	G	.	.	.	.	.	.	.	.	.	.	.	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P
Query Conservation								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																																																						.								.	.
Template Conservation																																																																								.								.	.
Template Sequence		N	C	F	S	L	D	L	K	Q	W	L	T	I	X	R	A	Y	E	N	G	G	H	A	Y	H	A	T	X	P	T	D	S	L	R	Q	F	R	D	A	I	L	E	A	K	E	I	G	F	D	I	L	R	D	A	Q	W	E	L	G	N	R	V	R	K	V	L	T	D	K	G	.	I	E	S	V	A	A	E	.	.
Template Known Secondary structure		S		S	T	T														T	T	S				S	S																																											T	T	.			B	S	B		T	.	.
Template Predicted Secondary structure																																																																								.								.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.			.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	.	.	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L
Query Conservation																																							.	.
Alig confidence													.	.	.	.	.																						.	.
Template Conservation													.	.	.	.	.
Template Sequence		G	F	E	A	P	G	V	V	V	S	Y	.	.	.	.	.	T	E	R	D	D	X	H	K	G	S	A	F	A	E	A	G	L	Q	I	A	A	G	V	P	L	K	V	G	E	P	D	N	F	K	T	F	R	L	G	L	F	G	L	D	K	L	T	D	I	D	G	T	V	E	R	F	E	K	A	L	D	E	V
Template Known Secondary structure		T		B		S	S						.	.	.	.	.		S						S	S						T	T										S	S				T	T										S					T
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.						.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions