Job Description P69910 Confidence 99.86% Date Thu Jan 5 12:12:18 GMT 2012 Rank 101 Aligned Residues 369 % Identity 11% Template c3jtxB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution Resolution 1.91 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		H	E	M	R	D	D	V	A	F	Q	I	I	N	D	E	L	Y	L	D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	.	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P
Query Conservation																																			.
Alig confidence																																			.															.
Template Conservation																																																		.
Template Sequence		K	P	Y	P	F	A	R	L	H	E	A	X	Q	G	I	S	A	P	E	G	X	E	A	V	P	L	H	I	G	E	P	K	H	P	T	P	K	V	I	T	D	A	L	T	A	S	L	H	.	E	L	E	K	Y	P	L	T	A	G	L	P	E	L	R	Q	A	C	A	N	W	L	K	R	R	Y	D	G	L	T	V
Template Known Secondary structure														T	T					T	T						T	T			S			S													T	G	G	.	G	G	G	S				T	T																	T	T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R
Query Conservation
Alig confidence								.																					.	.	.	.	.	.	.	.	.
Template Conservation								.																					.	.	.	.	.	.	.	.	.
Template Sequence		D	A	D	N	E	I	.	L	P	V	L	G	S	R	E	A	L	F	S	F	V	Q	T	V	L	N	P	.	.	.	.	.	.	.	.	.	V	G	I	K	P	A	I	V	S	P	N	P	F	Y	Q	I	Y	E	G	A	T	L	L	G	G	G	E	I	H	F	A	N	C	P	A	P	S	F	N	P	D	W	R	S
Template Known Secondary structure			T	T	T	S		.				S	S																.	.	.	.	.	.	.	.	.												S												T	T										T	T	T					G	G	G
Template Predicted Secondary structure								.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.										.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.						.	.	.
Predicted Secondary structure																								.	.	.																																																.	.	.	.	.
Query SS confidence																								.	.	.																																																.	.	.	.	.
Query Sequence		M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	.	.	.	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	.	.	.	.	.	R	L	P
Query Conservation																								.	.	.																																																.	.	.	.	.
Alig confidence																								.	.	.																	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		I	S	E	E	V	W	K	R	T	K	L	V	F	V	C	S	P	N	N	P	S	G	S	V	L	D	L	D	G	W	K	E	V	F	D	L	Q	D	K	Y	G	.	.	.	.	.	.	F	I	I	A	S	D	E	C	Y	S	E	I	Y	F	D	G	N	K	P	L	G	C	L	Q	A	A	A	Q	L	G	R	S	R
Template Known Secondary structure		S						T	T								S	S		T	T	T																					.	.	.	.	.	.								T	T	T	T			S	T	T													T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		Q	K	L	L	X	F	T	S	L	S	R	S	N	V	P	G	L	R	S	G	F	V	A	G	D	A	E	L	L	K	N	F	L	L	Y	R	T	.	.	.	.	.	.	.	.	.	.	.	Y	H	G	S	A	X	S	I	P	V	Q	R	A	S	I	A	A	W	D	.	.	D	E	Q	H	V	I	D	N	R	R	L
Template Known Secondary structure		T	T											S		G	G	G																					.	.	.	.	.	.	.	.	.	.	.			T																	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270												.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.						.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.									.	.	.	.	.
Query SS confidence																																																								.									.	.	.	.	.
Query Sequence		S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	.	R	L	R	G	W	Q	V	P	.	.	.	.	.	A	F	T	L	G	G	E	A	T	D	I	V
Query Conservation																																																								.									.	.	.	.	.
Alig confidence																						.	.	.	.	.	.												.	.	.	.	.													.									.	.	.	.	.
Template Conservation																						.	.	.	.	.	.												.	.	.	.	.
Template Sequence		Y	Q	E	K	F	E	R	V	I	P	I	L	Q	Q	V	F	D	V	K	L	.	.	.	.	.	.	P	D	A	S	F	Y	I	W	L	K	V	.	.	.	.	.	P	D	G	D	D	L	A	F	A	R	N	L	W	Q	K	A	A	I	Q	V	L	P	G	R	F	L	A	R	D	T	E	Q	G	N	P	G	E	G
Template Known Secondary structure														T	T	T	S					.	.	.	.	.	.		S	S	S	S							.	.	.	.	.	T	T	S																				G	G	G	G	S			B	T	T	B		T	T	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.												.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.							.	.	.	.	.	.	.	.	330	.	.						.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		Y	V	R	I	A	L	V	A	.	.	D	V	A	T	C	V	K	A	A	E	D	I	V	S	L	Y	R
Template Known Secondary structure									S	.	.
Template Predicted Secondary structure										.	.
Template SS confidence
		371	.	.	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions