Job Description P69910 Confidence 99.74% Date Thu Jan 5 12:12:18 GMT 2012 Rank 177 Aligned Residues 386 % Identity 11% Template c3g0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Resolution 1.75 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																			.																	.
Query SS confidence																																			.																	.
Query Sequence		H	E	M	R	D	D	V	A	F	Q	I	I	N	D	E	L	Y	L	D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	.	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	.	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A
Query Conservation																																			.																	.
Alig confidence																																			.																	.
Template Conservation
Template Sequence		G	X	A	S	I	R	D	L	V	A	L	V	T	N	L	E	K	A	T	G	T	K	F	C	R	X	E	X	G	V	P	G	L	P	A	P	Q	I	G	I	E	T	E	I	Q	K	L	R	E	G	V	A	S	I	Y	P	N	L	D	G	L	P	E	L	K	Q	E	A	S	R	F	A	K	L	F	V	N	I	D	I
Template Known Secondary structure		G	G																		T										S			S																	T	G	G	G	S				T	T
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	.	L	F	M	D	P
Query Conservation																																																																												.
Alig confidence									.	.	.																			.	.	.	.	.	.	.	.																																							.
Template Conservation									.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		P	A	R	A	C	V	P	.	.	.	T	V	G	S	X	Q	G	C	F	V	S	F	L	V	A	N	R	T	.	.	.	.	.	.	.	.	H	K	N	R	E	Y	G	T	L	F	I	D	P	G	F	N	L	N	K	L	Q	C	R	I	L	G	Q	K	F	E	S	F	D	L	F	E	Y	R	G	E	K	L	R	E
Template Known Secondary structure			G	G	G				.	.	.		S														T	T	S	.	.	.	.	.	.	.	.		T	T		S								S													T								G	G	G	G		T	T
Template Predicted Secondary structure									.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.									.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250							.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																														.	.	.																																.	.	.	.	.	.
Query SS confidence																														.	.	.																																.	.	.	.	.	.
Query Sequence		K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	.	.	.	.	.	.	A	P	F	V	A	P	D	I	V	W	D	F
Query Conservation																														.	.	.																																.	.	.	.	.	.
Alig confidence																														.	.	.													.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		K	L	E	S	Y	L	Q	T	G	Q	F	C	S	I	I	Y	S	N	P	N	N	P	T	W	Q	C	X	T	D	E	E	L	R	I	I	G	E	L	A	T	K	H	D	.	.	.	.	.	.	V	I	V	I	E	D	L	A	Y	F	G	X	D	F	R	K	D	Y	S	H	P	G	E	P	L	Y	Q	P	S	V	A
Template Known Secondary structure								T	T	T									S	S		T	T	T																			T	T	.	.	.	.	.	.								T	T	T	T			T	T	S				S	T	T	S	S						G	G
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.					.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																				.	.	.	.																																							.	.	.	.
Query SS confidence																																				.	.	.	.																																							.	.	.	.
Query Sequence		R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	.	.	.	.	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	.	.	.	.
Query Conservation																																				.	.	.	.																																							.	.	.	.
Alig confidence																																				.	.	.	.																																							.	.	.	.
Template Conservation
Template Sequence		N	Y	T	D	N	Y	I	L	A	L	S	S	S	A	F	S	Y	A	G	Q	R	I	G	V	L	X	I	S	G	K	L	Y	E	R	E	Y	P	D	L	E	E	S	F	G	R	L	R	F	G	E	A	L	S	S	S	A	L	Y	A	L	S	S	G	A	T	H	S	A	Q	W	G	X	A	A	X	L	K	A	C	N
Template Known Secondary structure		G	T		S												S		G	G	G															B		G	G	G					S		S	B							T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
			335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.			.	.	.	.	.
Predicted Secondary structure		.																																			.	.	.																																				.	.
Query SS confidence		.																																			.	.	.																																				.	.
Query Sequence		.	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	.	.	.	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	.	.	W	Q	V	P	A
Query Conservation		.																																			.	.	.																																				.	.
Alig confidence		.																												.							.	.	.															.	.	.	.	.																	.	.
Template Conservation																														.																								.	.	.	.	.
Template Sequence		D	G	E	Y	N	F	R	D	S	V	I	E	Y	G	R	K	A	R	I	X	K	K	X	F	L	D	N	G	.	F	N	I	V	Y	D	K	D	G	N	E	P	L	A	D	G	F	Y	F	T	V	G	Y	.	.	.	.	.	K	G	X	D	S	S	K	L	I	E	K	F	V	R	Y	G	X	C	A	I	T	L	K
Template Known Secondary structure		T	T	S																							T	T	T	.				S	S				T	T					S	S	S							.	.	.	.	.	T	T													T	T						S	T
Template Predicted Secondary structure																														.																								.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.						.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y
Query Conservation
Alig confidence											.	.	.								.
Template Conservation											.	.	.								.
Template Sequence		T	T	G	S	K	R	N	E	A	.	.	.	X	R	I	C	T	S	L	.	L	P	E	S	Q	F	P	D	L	E	K	R	L	Q	X	L	N	A	E
Template Known Secondary structure		T	T	T				T	T		.	.	.						S	S	.	S		G	G	G
Template Predicted Secondary structure											.	.	.								.
Template SS confidence
		401	.	.	.	.	.	.	.	.				410	.	.	.	.	.	.		.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.