Phyre 2 alignment of P69910 with c3fkdC

Job Description P69910
Confidence 99.77% Date Thu Jan 5 12:12:18 GMT 2012

Rank 159 Aligned Residues 322

% Identity 15% Template c3fkdC_

PDB info PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M
Query Conservation
Alig confidence																																			.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.																		.	.	.	.	.
Template Sequence	V	N	F	S	T	T	V	W	T	D	G	D	D	H	L	E	K	H	L	V	E	N	L	N	C	I	R	H	Y	P	E	P	D	A	.	.	.	.	.	.	G	T	L	R	Q	X	L	A	K	R	N	S	V	D	N	N	A	.	.	.	.	.	I	L	V	T	N	G	P	T	A	A	F	Y	Q	I	A	Q	A	F
Template Known Secondary structure				S			S															T	G	G	G	G	G	S				T	T		.	.	.	.	.	.											T	T			G	G	G	.	.	.	.	.					S													T
Template Predicted Secondary structure																																			.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
	18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.

	138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	S	R	S	L	I	A	I	P	S	F	A	E	Y	E	D	A	C	R	X	Y	E	H	E	V	C	F	Y	P	S	N	E	D	I	G	.	.	.	.	.	.	.	.	E	A	D	F	S	N	X	D	F	C	W	L	C	N	P	N	N	P	D	G	R	L
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S												T	T								T	T	S		G	G	.	.	.	.	.	.	.	.	G	S			T	T		S						S	S		T	T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template SS confidence
															88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.									.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

	218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q
Query Conservation
Alig confidence															.	.	.	.	.															.	.
Template Conservation															.	.	.	.	.															.	.
Template Sequence	L	Q	R	T	E	I	L	R	L	L	N	D	H	P	.	.	.	.	.	D	T	T	F	V	L	D	Q	S	Y	V	S	F	T	.	.	T	E	E	V	I	R	P	A	D	I	K	G	R	K	N	L	V	X	V	Y	S	F	S	H	A	Y	G	I	P	G	L	R	I	G	Y	I	V	A	N	K	D	F	X	K	R
Template Known Secondary structure														T	.	.	.	.	.	T	S							T	T	G	G	G		.	.	S	S					G	G	G	G	T	T		S	S							S	T	T	T	S	S		G	G	G
Template Predicted Secondary structure															.	.	.	.	.															.	.
Template SS confidence
	146	.	.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

	298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Sequence	V	A	A	F	S	T	P	W	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	L	A	I	E	A	A	K	F	I	L	I	H	P	A	Q	F	T	L	P	I	R	K	W	Q	R	N	T	V	D	F	I	T	A	L	N	R	L	D	G	V	E	V	H	.	.	.	.	.	P	S	G	T	T	F
Template Known Secondary structure			T	T			T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							S	T	T					.	.	.	.	.			S	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template SS confidence
	219	220	.	.	.	.	.	.	.	.															.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.						.	.	.	.	.	.

	378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	.	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y
Query Conservation																														.
Alig confidence							.	.	.	.																				.												.	.								.	.	.
Template Conservation							.	.	.	.																																.	.								.	.	.
Template Sequence	F	L	L	R	L	K	.	.	.	.	K	G	T	A	A	E	L	K	K	Y	X	L	E	E	Y	N	X	L	I	R	D	A	S	N	F	R	G	L	D	E	S	.	.	Y	V	R	I	T	T	Q	.	.	.	R	P	A	Q	N	Q	L	F	I	K	A	L	E	T	F	L	E	K
Template Known Secondary structure						S	.	.	.	.	S	S												T	T								T	T	S	T	T			T	T	.	.								.	.	.
Template Predicted Secondary structure							.	.	.	.																																.	.								.	.	.
Template SS confidence
	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.				.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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